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Assay Detail

CHEMBL3887997

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
HDAC enzyme inhibitionAssay: HDAC enzyme inhibition assays were performed using purified HDACs 1-10 essentially as described in Beckers et al., 2007, Int. J. Cancer., 121:1138-48 and Perez-Balado et al., 2007, J. Med. Chem., 50:2497-2505. Inhibition assays using nuclear extract were performed essentially as described in Herman et al., 2006, Nat. Chem. Biol., 2:551-558. Briefly, the purified HDACs or nuclear extract were incubated with an acetylated substrate in the absence of the compound to be assayed and with increasing concentrations of the compound. The rate of substrate deacetylation was measured under each condition, and half-maximal inhibitory concentration with regard to each HDAC was determined by standard means.
185
Total Activities
180
Compounds Tested
1
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

Histone deacetylase 1 (CHEMBL325)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Compositions including 6-aminohexanoic acid derivatives as HDAC inhibitors
(2016)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 185 6.08 8.17

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL99 TRICHOSTATIN 1.0 1 8.17
CHEMBL3898287 1 7.68
CHEMBL3980389 1 7.39
CHEMBL3908408 1 7.23
CHEMBL3967028 1 7.21
CHEMBL3933572 1 7.18
CHEMBL3975640 1 7.10
CHEMBL3964140 1 7.09
CHEMBL3937294 1 7.09
CHEMBL3942719 1 7.03
CHEMBL3919822 1 7.02
CHEMBL3969656 1 7.02
CHEMBL3913961 2 6.98
CHEMBL3905310 1 6.97
CHEMBL3921382 1 6.87
CHEMBL3968223 1 6.76
CHEMBL3918737 1 6.76
CHEMBL3909083 1 6.75
CHEMBL3939372 1 6.73
CHEMBL3897806 1 6.72
CHEMBL3975513 1 6.71
CHEMBL3980806 1 6.71
CHEMBL3929959 1 6.71
CHEMBL3930488 1 6.71
CHEMBL3903543 1 6.70
CHEMBL3978733 1 6.69
CHEMBL3891630 1 6.68
CHEMBL3926116 1 6.66
CHEMBL3973671 1 6.66
CHEMBL3938743 1 6.66

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL99 TRICHOSTATIN IC50 = 6.7 nM 8.17
CHEMBL3898287 IC50 = 21.0 nM 7.68
CHEMBL3980389 IC50 = 41.0 nM 7.39
CHEMBL3908408 IC50 = 59.0 nM 7.23
CHEMBL3967028 IC50 = 61.0 nM 7.21
CHEMBL3933572 IC50 = 66.0 nM 7.18
CHEMBL3975640 IC50 = 79.0 nM 7.10
CHEMBL3937294 IC50 = 81.0 nM 7.09
CHEMBL3964140 IC50 = 81.0 nM 7.09
CHEMBL3942719 IC50 = 93.0 nM 7.03
CHEMBL3969656 IC50 = 95.0 nM 7.02
CHEMBL3919822 IC50 = 95.0 nM 7.02
CHEMBL3913961 IC50 = 105.0 nM 6.98
CHEMBL3905310 IC50 = 107.0 nM 6.97
CHEMBL3921382 IC50 = 135.0 nM 6.87
CHEMBL3918737 IC50 = 172.0 nM 6.76
CHEMBL3968223 IC50 = 174.0 nM 6.76
CHEMBL3909083 IC50 = 177.0 nM 6.75
CHEMBL3939372 IC50 = 187.0 nM 6.73
CHEMBL3897806 IC50 = 190.0 nM 6.72
CHEMBL3930488 IC50 = 193.0 nM 6.71
CHEMBL3929959 IC50 = 197.0 nM 6.71
CHEMBL3980806 IC50 = 196.0 nM 6.71
CHEMBL3975513 IC50 = 195.0 nM 6.71
CHEMBL3903543 IC50 = 201.0 nM 6.70
CHEMBL3978733 IC50 = 203.0 nM 6.69
CHEMBL3891630 IC50 = 207.0 nM 6.68
CHEMBL3913961 IC50 = 210.0 nM 6.68
CHEMBL3938743 IC50 = 220.0 nM 6.66
CHEMBL3973671 IC50 = 218.0 nM 6.66
CHEMBL3926116 IC50 = 218.0 nM 6.66
CHEMBL3960543 IC50 = 224.0 nM 6.65
CHEMBL3891665 IC50 = 234.0 nM 6.63
CHEMBL3983762 IC50 = 238.0 nM 6.62
CHEMBL3910629 IC50 = 246.0 nM 6.61
CHEMBL3986857 IC50 = 248.0 nM 6.61
CHEMBL3910879 IC50 = 258.0 nM 6.59
CHEMBL3985895 IC50 = 258.0 nM 6.59
CHEMBL3942866 IC50 = 254.0 nM 6.59
CHEMBL3987199 IC50 = 263.0 nM 6.58
CHEMBL3973794 IC50 = 262.0 nM 6.58
CHEMBL3923213 IC50 = 264.0 nM 6.58
CHEMBL3937638 IC50 = 272.0 nM 6.57
CHEMBL3946574 IC50 = 270.0 nM 6.57
CHEMBL3957512 IC50 = 278.0 nM 6.56
CHEMBL3961745 IC50 = 299.0 nM 6.52
CHEMBL3973971 IC50 = 299.0 nM 6.52
CHEMBL3964239 IC50 = 300.0 nM 6.52
CHEMBL3925220 IC50 = 300.0 nM 6.52
CHEMBL3932247 IC50 = 312.0 nM 6.51