Skip to main content
Free research Free research Free assay review with research home and workspace preview
Quick search ChEMBL 36
Assay Detail

CHEMBL3889155

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
FRET-Based Membrane Potential Assay: Two days prior to the experiment, frozen HEK293 cells stably expressing recombinant human Nav1.7 were quickly thawed and plated at 25,000 cells/well in growth medium [DMEM (Invitrogen #11965) with 10% HI FBS (Invitrogen #10082), 2 mM glutamine, 100 units/mL penicillin, 0.1 mg/mL streptomycin (PSG, Sigma #G1146), and 500 ug/mL Geneticin (Invitrogen #10131)] in black-walled, clear-bottom 384-well poly-D-lysine-coated assay plates (Greiner Bio-One, Frickenhausen, Germany) and incubated in a humidified 5% CO2 incubator at 37° C. On the day of the assay, medium was removed by aspiration, and cells were washed with assay buffer [HBSS (Invitrogen, Carlsbad, Calif.) containing 20 mM HEPES (Invitrogen, Carlsbad, Calif.)]. After washing, 30 uL assay buffer containing the fluorescent voltage-sensor probe CC2-DMPE (Invitrogen, Carlsbad, Calif.) at 20 uM and 0.01% pluronic F-127 (Invitrogen, Carlsbad, Calif.) was added to the cells. Cells were incubated for 40 minutes at room temperature in the dark. Following the incubation, the cells were washed and 30 uL assay buffer containing 2.5 uM DiSBAC2(3) substrate (Invitrogen, Carlsbad, Calif.) and 0.5 mM VABSC-1 (Invitrogen, Carlsbad, Calif.) was added to the cells. The cells were incubated for 90 minutes at room temperature in the dark. Fluorescence readings were made using a FLIPR TETRA (Molecular Devices, Sunnyvale Calif.) equipped with voltage-sensor probe optics. At the start of each experiment the optimal (EC80) concentration of depolarizing agent (veratridine) was determined by testing a dilution curve of assay buffer containing veratridine (Sigma-Aldrich, St. Louis, Mo.) and 1 mg/mL scorpion venom (SVqq, from Leiurus quinquestriatus; Sigma-Aldrich, St. Louis, Mo.). Compounds were dissolved in dimethyl sulfoxide, and 8-point, 1:3 dilution concentration-response curves were prepared in duplicate in dimethyl sulfoxide, followed by preparation of 0.8 uL/well daughter plates of the dilutions. Test compounds in the daughter plate were diluted to (Ë¿3x) solutions in assay buffer immediately before assaying. Using the FLIPR TETRA, 20 uL of the (3x) compound solutions were first added to the cells, then 20 uL of depolarizing solution (3xEC80 veratridine+SVqq) were added 3 minutes later to activate the channel. Changes in fluorescence were measured at wavelengths of 440-480 nm and 565-625 nm over the course of the experimental run. Membrane depolarization was expressed as a ratio of the maximum F440-480 nm/F565-625 nm reading above average baseline F440-480 nm/F565-625 nm reading. IC50 values were calculated from curve fits of the ratio data using a four-parameter logistic Hill equation (Accelrys Assay Explorer 3.3 Client, Accelrys, San Diego, Calif.) with percent inhibition plotted against compound concentration.
623
Total Activities
619
Compounds Tested
1
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Cell Type HEK293
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

Sodium channel protein type 9 subunit alpha (CHEMBL4296)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

6-heteroaryloxy- or 6-aryloxy-quinoline-2-carboxamides and method of use
(2016)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 623 5.65 6.78

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3953769 1 6.78
CHEMBL3979650 1 6.69
CHEMBL3909317 1 6.66
CHEMBL3898654 1 6.66
CHEMBL3921936 1 6.65
CHEMBL3905520 1 6.63
CHEMBL3971026 1 6.62
CHEMBL3895861 1 6.62
CHEMBL3957685 1 6.59
CHEMBL3929031 1 6.58
CHEMBL3921672 1 6.57
CHEMBL3938475 1 6.54
CHEMBL3940431 1 6.54
CHEMBL3913522 1 6.53
CHEMBL3936552 1 6.53
CHEMBL3911359 1 6.53
CHEMBL3925435 1 6.52
CHEMBL3890294 1 6.52
CHEMBL3950690 1 6.51
CHEMBL3909018 1 6.49
CHEMBL3941849 1 6.48
CHEMBL3958619 1 6.46
CHEMBL3952300 1 6.46
CHEMBL3939152 1 6.45
CHEMBL3954229 1 6.45
CHEMBL3919151 1 6.45
CHEMBL3908904 1 6.43
CHEMBL3968697 1 6.43
CHEMBL3950097 1 6.43
CHEMBL3945042 1 6.43

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3953769 IC50 = 166.0 nM 6.78
CHEMBL3979650 IC50 = 206.0 nM 6.69
CHEMBL3909317 IC50 = 221.0 nM 6.66
CHEMBL3898654 IC50 = 218.0 nM 6.66
CHEMBL3921936 IC50 = 222.0 nM 6.65
CHEMBL3905520 IC50 = 232.0 nM 6.63
CHEMBL3971026 IC50 = 238.0 nM 6.62
CHEMBL3895861 IC50 = 238.0 nM 6.62
CHEMBL3957685 IC50 = 259.0 nM 6.59
CHEMBL3929031 IC50 = 262.0 nM 6.58
CHEMBL3921672 IC50 = 268.0 nM 6.57
CHEMBL3938475 IC50 = 285.0 nM 6.54
CHEMBL3940431 IC50 = 285.0 nM 6.54
CHEMBL3913522 IC50 = 295.0 nM 6.53
CHEMBL3911359 IC50 = 294.0 nM 6.53
CHEMBL3936552 IC50 = 293.0 nM 6.53
CHEMBL3890294 IC50 = 304.0 nM 6.52
CHEMBL3925435 IC50 = 304.0 nM 6.52
CHEMBL3950690 IC50 = 311.0 nM 6.51
CHEMBL3909018 IC50 = 325.0 nM 6.49
CHEMBL3941849 IC50 = 329.0 nM 6.48
CHEMBL3952300 IC50 = 344.0 nM 6.46
CHEMBL3958619 IC50 = 348.0 nM 6.46
CHEMBL3919151 IC50 = 356.0 nM 6.45
CHEMBL3954229 IC50 = 354.0 nM 6.45
CHEMBL3939152 IC50 = 356.0 nM 6.45
CHEMBL3950097 IC50 = 375.0 nM 6.43
CHEMBL3968697 IC50 = 370.0 nM 6.43
CHEMBL3908904 IC50 = 368.0 nM 6.43
CHEMBL3910299 IC50 = 370.0 nM 6.43
CHEMBL3945042 IC50 = 371.0 nM 6.43
CHEMBL3904532 IC50 = 382.0 nM 6.42
CHEMBL3951748 IC50 = 392.0 nM 6.41
CHEMBL3918265 IC50 = 400.0 nM 6.40
CHEMBL3954256 IC50 = 398.0 nM 6.40
CHEMBL3950810 IC50 = 402.0 nM 6.40
CHEMBL3912885 IC50 = 399.0 nM 6.40
CHEMBL3925132 IC50 = 409.0 nM 6.39
CHEMBL3970045 IC50 = 406.0 nM 6.39
CHEMBL3957043 IC50 = 405.0 nM 6.39
CHEMBL3936763 IC50 = 403.0 nM 6.39
CHEMBL3948882 IC50 = 429.0 nM 6.37
CHEMBL3895682 IC50 = 439.0 nM 6.36
CHEMBL3972071 IC50 = 442.0 nM 6.36
CHEMBL3977732 IC50 = 448.0 nM 6.35
CHEMBL3936763 IC50 = 443.0 nM 6.35
CHEMBL3911715 IC50 = 454.0 nM 6.34
CHEMBL3970942 IC50 = 471.0 nM 6.33
CHEMBL3974796 IC50 = 488.0 nM 6.31
CHEMBL3932839 IC50 = 500.0 nM 6.30