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Assay Detail

CHEMBL5730968

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Binding
Electrophysiological Assay (EP) (In vitro Assay): Patch voltage clamp electrophysiology allows for the direct measurement and quantification of block of voltage-gated sodium channels (NaV's), and allows the determination of the time- and voltage-dependence of block which has been interpreted as differential binding to the resting, open, and inactivated states of the sodium channel (Hille, B., Journal of General Physiology (1977), 69: 497-515).The following patch voltage clamp electrophysiology studies were performed on representative compounds of the invention using human embryonic kidney cells (HEK), permanently transfected with an expression vector containing the full-length cDNA coding for the desired human sodium channel α-subunit, grown in culture media containing 10% FBS, 1% PSG, and 0.5 mg/mL G418 at 37° C. with 5% CO2. HEK cells used for the electrophysiology (EP) recordings had a passage number of less than 40 for all studies and were used within three days from the time of plating, NaV1.7 and NaV1.5 cDNAs (NM_002977 and AC137587; SCN5A, respectively) were stably expressed in HEK-293 cells. The β1 subunit was coexpressed in both the NaV1.7 and NaV1.5 cell lines.Sodium currents were measured rising the patch clamp technique in the whole-cell configuration using either a PatchXpress automated voltage clamp or manually using an Axopatch 200B (Axon Instruments) or Model 2400 (A-M systems) amplifier. The manual voltage clamp protocol was as follows: Borosilicate glass micropipettes were fire-polished to a tip diameter yielding a resistance of 2-4 Mohms in the working solutions. The pipette was filled with a solution comprised of: 5 mM NaCl, 10 mM CsCl, 120 mM CsF, 0.1 mM CaCl2, 2 mM MgCl2, 10 mM HEPES, 10 mM EGTA; and adjusted to pH 7.2 with CsOH. The external solution had the following composition: 140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES; and adjusted to pH 7.4 with NaOH. In some studies, the external sodium was reduced by equimolar replacement with choline. Osmolality in the CsF internal and NaCl external solutions was adjusted to 300 mOsm/kg and 310 mOsm/kg with glucose, respectively. All recordings were performed at ambient temperature in a bath chamber with a volume of 150 μL. Control sodium currents were measured in 0.5% DMSO.
66
Total Activities
22
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

Substituted benzamides and methods of use thereof
(2017)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 22 6.67 7.89
kon 22 - -
k_off 22 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5924078 3 7.89
CHEMBL5962168 3 7.81
CHEMBL6030143 3 7.48
CHEMBL5820839 3 7.31
CHEMBL5999454 3 7.11
CHEMBL5992717 3 6.96
CHEMBL5804705 3 6.96
CHEMBL5830350 3 6.95
CHEMBL6054608 3 6.77
CHEMBL5964169 3 6.72
CHEMBL5992687 3 6.70
CHEMBL5840472 3 6.55
CHEMBL6065040 3 6.51
CHEMBL5960200 3 6.42
CHEMBL5874035 3 6.35
CHEMBL5094715 3 6.26
CHEMBL6054732 3 6.21
CHEMBL5906114 3 6.17
CHEMBL5951272 3 6.09
CHEMBL5766582 3 5.56
CHEMBL5939848 3 5.39
CHEMBL5844763 3 -

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5924078 IC50 = 13.0 nM 7.89
CHEMBL5962168 IC50 = 15.4 nM 7.81
CHEMBL6030143 IC50 = 33.1 nM 7.48
CHEMBL5820839 IC50 = 49.0 nM 7.31
CHEMBL5999454 IC50 = 78.0 nM 7.11
CHEMBL5992717 IC50 = 110.0 nM 6.96
CHEMBL5804705 IC50 = 109.0 nM 6.96
CHEMBL5830350 IC50 = 113.0 nM 6.95
CHEMBL6054608 IC50 = 169.0 nM 6.77
CHEMBL5964169 IC50 = 190.0 nM 6.72
CHEMBL5992687 IC50 = 199.0 nM 6.70
CHEMBL5840472 IC50 = 280.0 nM 6.55
CHEMBL6065040 IC50 = 310.0 nM 6.51
CHEMBL5960200 IC50 = 380.0 nM 6.42
CHEMBL5874035 IC50 = 449.0 nM 6.35
CHEMBL5094715 IC50 = 552.0 nM 6.26
CHEMBL6054732 IC50 = 623.0 nM 6.21
CHEMBL5906114 IC50 = 669.0 nM 6.17
CHEMBL5951272 IC50 = 814.0 nM 6.09
CHEMBL5766582 IC50 = 2756.0 nM 5.56
CHEMBL5939848 IC50 = 4100.0 nM 5.39
CHEMBL5951272 k_off = - s-1 -
CHEMBL5804705 k_off = - s-1 -
CHEMBL5951272 kon = - -
CHEMBL5874035 k_off = - s-1 -
CHEMBL5999454 kon = - -
CHEMBL5766582 kon = - -
CHEMBL5766582 k_off = - s-1 -
CHEMBL6030143 kon = - -
CHEMBL6030143 k_off = - s-1 -
CHEMBL6054608 kon = - -
CHEMBL6054608 k_off = - s-1 -
CHEMBL5992687 kon = - -
CHEMBL5992687 k_off = - s-1 -
CHEMBL5094715 kon = - -
CHEMBL5804705 kon = - -
CHEMBL5962168 kon = - -
CHEMBL5962168 k_off = - s-1 -
CHEMBL5906114 k_off = - s-1 -
CHEMBL5906114 kon = - -
CHEMBL5830350 kon = - -
CHEMBL5844763 k_off = - s-1 -
CHEMBL5830350 k_off = - s-1 -
CHEMBL5844763 kon = - -
CHEMBL5844763 IC50 = 682000.0 nM -
CHEMBL6054732 kon = - -
CHEMBL6065040 k_off = - s-1 -
CHEMBL6065040 kon = - -
CHEMBL5874035 kon = - -
CHEMBL6054732 k_off = - s-1 -