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Assay Detail

CHEMBL5731323

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Binding
Inhibition of Human SHMT: For the SHMT1 and SHMT2 in vitro enzymatic assays, the rate of 5,10-methylene tetrahydrofolate formation catalyzed by SHMT1/2 was indirectly evaluated by coupling with excess MTHFD2, which converts NAD+ to NADH allowing for reaction monitoring by absorption at 340 nm. The reaction was started by addition of serine (1 mM final) to either human SHMT1 or human SHMT2 (2 mcg/mL), and human MTHFD2 (25 mcg/mL) in a buffer of 50 mM potassium phosphate (pH 7.4), 0.3 mM tetrahydrofolate, 7.5 mM dithiothreitol, 1.25 mM NAD+, and 4% DMSO. Inhibition of initial reaction velocity was determined by adding various inhibitors at different concentrations and monitored as described. IC50 may be calculated based on this assay. For the MTHFD2 in vitro assay, the rate of NADH formation is directly monitored at 340 nm. The reaction is started by addition of 0.125 uM (final) of 5,10 methylene tetrahydrofolate to MTHFD2 (2.5 mcg/mL), 50 mM potassium phosphate (pH 7.4), 7.5 mM dithiothreitol, 1.25 mM NAD+, and 4% DMSO.
108
Total Activities
33
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

SHMT inhibitors
(2018)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 36 7.55 9.77
kon 36 - -
k_off 36 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5945752 3 9.77
CHEMBL6041327 3 9.40
CHEMBL5748724 6 9.19
CHEMBL5951491 3 9.10
CHEMBL5796912 3 9.00
CHEMBL5747977 3 8.85
CHEMBL5952857 3 8.77
CHEMBL6026678 3 8.70
CHEMBL5860275 3 8.40
CHEMBL5978303 3 8.12
CHEMBL5903310 3 8.11
CHEMBL6065909 3 7.89
CHEMBL5852298 9 7.82
CHEMBL5743786 3 7.72
CHEMBL6001953 3 7.46
CHEMBL5973762 3 7.38
CHEMBL5843823 3 7.37
CHEMBL4083734 3 7.18
CHEMBL5900986 3 7.00
CHEMBL5741507 3 6.88
CHEMBL5955032 3 6.78
CHEMBL6010386 3 6.40
CHEMBL5935551 3 6.40
CHEMBL5749700 3 6.30
CHEMBL5804050 3 6.12
CHEMBL4083506 3 5.92
CHEMBL5958227 3 5.92
CHEMBL5925299 3 5.75
CHEMBL5896238 3 5.46
CHEMBL5756978 3 5.34

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5945752 IC50 = 0.17 nM 9.77
CHEMBL6041327 IC50 = 0.4 nM 9.40
CHEMBL5748724 IC50 = 0.65 nM 9.19
CHEMBL5748724 IC50 = 0.79 nM 9.10
CHEMBL5951491 IC50 = 0.8 nM 9.10
CHEMBL5796912 IC50 = 1.0 nM 9.00
CHEMBL5747977 IC50 = 1.4 nM 8.85
CHEMBL5952857 IC50 = 1.7 nM 8.77
CHEMBL6026678 IC50 = 2.0 nM 8.70
CHEMBL5860275 IC50 = 4.0 nM 8.40
CHEMBL5978303 IC50 = 7.5 nM 8.12
CHEMBL5903310 IC50 = 7.8 nM 8.11
CHEMBL6065909 IC50 = 13.0 nM 7.89
CHEMBL5852298 IC50 = 15.0 nM 7.82
CHEMBL5852298 IC50 = 15.0 nM 7.82
CHEMBL5743786 IC50 = 19.0 nM 7.72
CHEMBL5852298 IC50 = 27.0 nM 7.57
CHEMBL6001953 IC50 = 35.0 nM 7.46
CHEMBL5973762 IC50 = 42.0 nM 7.38
CHEMBL5843823 IC50 = 43.0 nM 7.37
CHEMBL4083734 IC50 = 66.0 nM 7.18
CHEMBL5900986 IC50 = 100.0 nM 7.00
CHEMBL5741507 IC50 = 131.0 nM 6.88
CHEMBL5955032 IC50 = 168.0 nM 6.78
CHEMBL5935551 IC50 = 400.0 nM 6.40
CHEMBL6010386 IC50 = 400.0 nM 6.40
CHEMBL5749700 IC50 = 500.0 nM 6.30
CHEMBL5804050 IC50 = 756.0 nM 6.12
CHEMBL4083506 IC50 = 1193.0 nM 5.92
CHEMBL5958227 IC50 = 1191.0 nM 5.92
CHEMBL5925299 IC50 = 1768.0 nM 5.75
CHEMBL5896238 IC50 = 3464.0 nM 5.46
CHEMBL5756978 IC50 = 4580.0 nM 5.34
CHEMBL4083734 kon = - -
CHEMBL5852298 kon = - -
CHEMBL5852298 k_off = - s-1 -
CHEMBL6065909 k_off = - s-1 -
CHEMBL5852298 kon = - -
CHEMBL5903310 kon = - -
CHEMBL6065909 kon = - -
CHEMBL5955032 kon = - -
CHEMBL5900986 k_off = - s-1 -
CHEMBL5900986 kon = - -
CHEMBL4083506 k_off = - s-1 -
CHEMBL4083506 kon = - -
CHEMBL5896238 k_off = - s-1 -
CHEMBL5896238 kon = - -
CHEMBL6010386 k_off = - s-1 -
CHEMBL6010386 kon = - -
CHEMBL5749700 k_off = - s-1 -