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Assay Detail

CHEMBL5731324

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Binding
Inhibition of Human SHMT: For the SHMT1 and SHMT2 in vitro enzymatic assays, the rate of 5,10-methylene tetrahydrofolate formation catalyzed by SHMT1/2 was indirectly evaluated by coupling with excess MTHFD2, which converts NAD+ to NADH allowing for reaction monitoring by absorption at 340 nm. The reaction was started by addition of serine (1 mM final) to either human SHMT1 or human SHMT2 (2 mcg/mL), and human MTHFD2 (25 mcg/mL) in a buffer of 50 mM potassium phosphate (pH 7.4), 0.3 mM tetrahydrofolate, 7.5 mM dithiothreitol, 1.25 mM NAD+, and 4% DMSO. Inhibition of initial reaction velocity was determined by adding various inhibitors at different concentrations and monitored as described. IC50 may be calculated based on this assay. For the MTHFD2 in vitro assay, the rate of NADH formation is directly monitored at 340 nm. The reaction is started by addition of 0.125 uM (final) of 5,10 methylene tetrahydrofolate to MTHFD2 (2.5 mcg/mL), 50 mM potassium phosphate (pH 7.4), 7.5 mM dithiothreitol, 1.25 mM NAD+, and 4% DMSO.
54
Total Activities
16
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Serine hydroxymethyltransferase, cytosolic (CHEMBL1772927)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

SHMT inhibitors
(2018)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 18 7.99 9.40
kon 18 - -
k_off 18 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5747977 3 9.40
CHEMBL6041327 3 8.77
CHEMBL5860275 3 8.70
CHEMBL5952857 3 8.62
CHEMBL6026678 3 8.40
CHEMBL5852298 9 8.30
CHEMBL6065909 3 8.30
CHEMBL5843823 3 8.10
CHEMBL4083734 3 7.89
CHEMBL5743786 3 7.77
CHEMBL5903310 3 7.77
CHEMBL6001953 3 7.70
CHEMBL5741507 3 7.17
CHEMBL5955032 3 6.69
CHEMBL4083506 3 6.23
CHEMBL6028893 3 -

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5747977 IC50 = 0.4 nM 9.40
CHEMBL6041327 IC50 = 1.7 nM 8.77
CHEMBL5860275 IC50 = 2.0 nM 8.70
CHEMBL5952857 IC50 = 2.4 nM 8.62
CHEMBL6026678 IC50 = 4.0 nM 8.40
CHEMBL5852298 IC50 = 5.0 nM 8.30
CHEMBL5852298 IC50 = 5.0 nM 8.30
CHEMBL6065909 IC50 = 5.0 nM 8.30
CHEMBL5843823 IC50 = 8.0 nM 8.10
CHEMBL4083734 IC50 = 13.0 nM 7.89
CHEMBL5903310 IC50 = 16.9 nM 7.77
CHEMBL5743786 IC50 = 17.0 nM 7.77
CHEMBL6001953 IC50 = 20.0 nM 7.70
CHEMBL5852298 IC50 = 21.0 nM 7.68
CHEMBL5741507 IC50 = 67.0 nM 7.17
CHEMBL5955032 IC50 = 206.0 nM 6.69
CHEMBL4083506 IC50 = 593.0 nM 6.23
CHEMBL6028893 k_off = - s-1 -
CHEMBL6028893 kon = - -
CHEMBL6028893 IC50 > 5000.0 nM -
CHEMBL5743786 k_off = - s-1 -
CHEMBL5743786 kon = - -
CHEMBL5843823 k_off = - s-1 -
CHEMBL5741507 kon = - -
CHEMBL5860275 k_off = - s-1 -
CHEMBL5860275 kon = - -
CHEMBL6026678 k_off = - s-1 -
CHEMBL6026678 kon = - -
CHEMBL5952857 k_off = - s-1 -
CHEMBL5952857 kon = - -
CHEMBL5747977 k_off = - s-1 -
CHEMBL5747977 kon = - -
CHEMBL6041327 k_off = - s-1 -
CHEMBL5852298 kon = - -
CHEMBL6001953 kon = - -
CHEMBL6001953 k_off = - s-1 -
CHEMBL5903310 k_off = - s-1 -
CHEMBL5852298 kon = - -
CHEMBL5741507 k_off = - s-1 -
CHEMBL5852298 k_off = - s-1 -
CHEMBL5852298 kon = - -
CHEMBL5852298 k_off = - s-1 -
CHEMBL6041327 kon = - -
CHEMBL5852298 k_off = - s-1 -
CHEMBL4083734 kon = - -
CHEMBL4083734 k_off = - s-1 -
CHEMBL6065909 kon = - -
CHEMBL6065909 k_off = - s-1 -
CHEMBL5903310 kon = - -
CHEMBL5843823 kon = - -