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Assay Detail

CHEMBL5732618

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
Electrophysiology Assay: 1) Pre-spotted compounds (in neat DMSO) into compound plates. Vehicle control (neat DMSO), the positive control (20 mM DMSO stock tetracaine, 125 μM final in assay) and test compounds were added to each well at 160× desired final concentration in neat DMSO. Final compound plate volume was 80 μL (80-fold intermediate dilution from 1 μL DMSO spot; 160-fold final dilution after transfer to cell plate). Final DMSO concentration for all wells in assay was 0.625%.2) Prepared Hexyl Dye Solution.3) Prepared cell plates. On the day of the assay, medium was aspirated and cells were washed three times with 100 μL of Bath1 Solution, maintaining 25 μL residual volume in each well.4) Dispensed 25 μL per well of Hexyl Dye Solution into cell plates. Incubated for 20-35 minutes at room temp or ambient conditions.5) Dispensed 80 μL per well of Bath1 into compound plates. Acid Yellow-17 (1 mM) was added and Potassium Chloride was altered from 4.5 to 20 mM depending on the NaV subtype and assay sensitivity.6) Washed cell plates three times with 100 μL per well of Bath1, leaving 25 μL of residual volume. Then transfered 25 uL per well from Compound Plates to Cell Plates. Incubated for 20-35 minutes at room temp/ambient condition.7) Read Plate on E-VIPR. Used the current-controlled amplifier to deliver stimulation wave pulses for 10 seconds and a scan rate of 200 Hz. A pre-stimulus recording was performed for 0.5 seconds to obtain the un-stimulated intensities baseline. The stimulatory waveform was followed by 0.5 seconds of post-stimulation recording to examine the relaxation to the resting state.
480
Total Activities
159
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

Sodium channel protein type 10 subunit alpha (CHEMBL5451)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Pyridone amides as modulators of sodium channels
(2017)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 160 6.64 9.00
kon 160 - -
k_off 160 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3678273 3 9.00
CHEMBL3683097 3 8.70
CHEMBL3678270 3 8.52
CHEMBL3683093 3 8.30
CHEMBL3678272 3 8.22
CHEMBL3678274 3 8.15
CHEMBL3683092 3 8.00
CHEMBL3678193 3 7.96
CHEMBL3678240 3 7.96
CHEMBL3683094 3 7.96
CHEMBL3678248 3 7.92
CHEMBL3678232 3 7.89
CHEMBL3678234 3 7.89
CHEMBL3678173 3 7.85
CHEMBL3678179 3 7.85
CHEMBL3678249 3 7.80
CHEMBL3678271 3 7.80
CHEMBL3678194 6 7.77
CHEMBL5864294 3 7.75
CHEMBL3678213 3 7.72
CHEMBL3678268 3 7.72
CHEMBL3678207 3 7.70
CHEMBL3678212 3 7.62
CHEMBL3678242 3 7.58
CHEMBL3678250 3 7.58
CHEMBL3678247 3 7.57
CHEMBL3678192 3 7.55
CHEMBL3678238 3 7.54
CHEMBL3678183 3 7.52
CHEMBL3678217 3 7.52

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3678273 IC50 = 1.0 nM 9.00
CHEMBL3683097 IC50 = 2.0 nM 8.70
CHEMBL3678270 IC50 = 3.0 nM 8.52
CHEMBL3683093 IC50 = 5.0 nM 8.30
CHEMBL3678272 IC50 = 6.0 nM 8.22
CHEMBL3678274 IC50 = 7.0 nM 8.15
CHEMBL3683092 IC50 = 10.0 nM 8.00
CHEMBL3678193 IC50 = 11.0 nM 7.96
CHEMBL3683094 IC50 = 11.0 nM 7.96
CHEMBL3678240 IC50 = 11.0 nM 7.96
CHEMBL3678248 IC50 = 12.0 nM 7.92
CHEMBL3678232 IC50 = 13.0 nM 7.89
CHEMBL3678234 IC50 = 13.0 nM 7.89
CHEMBL3678179 IC50 = 14.0 nM 7.85
CHEMBL3678173 IC50 = 14.0 nM 7.85
CHEMBL3678249 IC50 = 16.0 nM 7.80
CHEMBL3678271 IC50 = 16.0 nM 7.80
CHEMBL3678194 IC50 = 17.0 nM 7.77
CHEMBL5864294 IC50 = 18.0 nM 7.75
CHEMBL3678213 IC50 = 19.0 nM 7.72
CHEMBL3678268 IC50 = 19.0 nM 7.72
CHEMBL3678207 IC50 = 20.0 nM 7.70
CHEMBL3678212 IC50 = 24.0 nM 7.62
CHEMBL3678250 IC50 = 26.0 nM 7.58
CHEMBL3678242 IC50 = 26.0 nM 7.58
CHEMBL3678247 IC50 = 27.0 nM 7.57
CHEMBL3678192 IC50 = 28.0 nM 7.55
CHEMBL3678238 IC50 = 29.0 nM 7.54
CHEMBL3678217 IC50 = 30.0 nM 7.52
CHEMBL3678230 IC50 = 30.0 nM 7.52
CHEMBL3678183 IC50 = 30.0 nM 7.52
CHEMBL3678239 IC50 = 31.0 nM 7.51
CHEMBL3678221 IC50 = 32.0 nM 7.50
CHEMBL3678224 IC50 = 34.0 nM 7.47
CHEMBL6032483 IC50 = 35.0 nM 7.46
CHEMBL5909547 IC50 = 36.0 nM 7.44
CHEMBL3678228 IC50 = 37.0 nM 7.43
CHEMBL3678168 IC50 = 39.0 nM 7.41
CHEMBL3678203 IC50 = 40.0 nM 7.40
CHEMBL3678191 IC50 = 44.0 nM 7.36
CHEMBL3683091 IC50 = 44.0 nM 7.36
CHEMBL3678244 IC50 = 46.0 nM 7.34
CHEMBL3678243 IC50 = 46.0 nM 7.34
CHEMBL3678216 IC50 = 47.0 nM 7.33
CHEMBL3678170 IC50 = 50.0 nM 7.30
CHEMBL3678200 IC50 = 51.0 nM 7.29
CHEMBL3678236 IC50 = 51.0 nM 7.29
CHEMBL3683095 IC50 = 52.0 nM 7.28
CHEMBL3639770 IC50 = 54.0 nM 7.27
CHEMBL3678237 IC50 = 54.0 nM 7.27