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Assay Detail

CHEMBL5735276

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Binding
Inhibition of fibrosis: Each compound was dissolved in DMSO as a 10 mM stock and used to prepare compound source plates. Serial dilution (1:3, 8-point dose-response curves from 15 μM to 5 nM) and compound transfer was performed using the ECHO 550 (Labcyte, Sunnyvale, Calif.) into 384-well clear bottom assay plates (Greiner Bio-One) with appropriate DMSO backfill for a final DMSO concentration of 0.1%. LL29 cells were plated at 1,000 cells/well in 50 μl/well serum free F12 medium. One hour after addition of the cells, TGF-β1 (Peprotech; 10 ng/ml) was added to the plates to induce fibrosis (ref 1 and 2 above). Wells untreated with TGF-β1 were used as control for normalization and calculating IC50 values. Cells were incubated at 37° C. and 5% CO2 for 3 days. Cells were fixed using 4% formaldehyde (Electron Microscopy Sciences), washed 3 times with PBS followed by blocking and permeabilization using 3% Bovine Serum Albumin (BSA; Sigma) and 0.3% Triton X-100 (Sigma) in PBS. Cells were then stained with antibody specific to α-smooth muscle actin (αSMA; Abcam) (ref. 1 and 2 above) in 3% Bovine Serum Albumin (BSA; Sigma) and 0.3% Triton X-100 (Sigma) in PBS, and incubated overnight at 4° C. Cells were then washed 3 times with PBS, followed by incubation with Alexa Flor-647 conjugated secondary antibody (Life Tech) and DAPI at room temperature for 1 hour. Cells were then washed 3 times with PBS and plates were sealed for imaging. αSMA staining was imaged by excitation at 630 nm and emission at 665 nm and quantified using the Compartmental Analysis program on the CellInsight CX5 (Thermo Scientific). % of total cells positive for αSMA were counted in each well and normalized to the average of 8 wells treated with TGF-β1 on the same plate using Excel (Microsoft Inc.). The normalized averages (fold change over untreated) of 6 replicate wells for each compound concentration were used to create dose-responses curves and IC50 values were calculated using non-linear regression curve fit in Prism (GraphPad).
96
Total Activities
32
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

5-substituted indazole-3-carboxamides and preparation and use thereof
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 32 6.53 7.29
kon 32 - -
k_off 32 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4779515 3 7.29
CHEMBL5805028 3 7.17
CHEMBL5941358 3 7.14
CHEMBL6025254 3 7.02
CHEMBL4785547 3 6.89
CHEMBL4743240 3 6.88
CHEMBL5996110 3 6.87
CHEMBL4761354 3 6.85
CHEMBL5891191 3 6.79
CHEMBL4754606 3 6.76
CHEMBL4743194 3 6.75
CHEMBL5814430 3 6.73
CHEMBL5936099 3 6.72
CHEMBL5962798 3 6.70
CHEMBL6024193 3 6.70
CHEMBL4799007 3 6.64
CHEMBL4785348 3 6.62
CHEMBL5774457 3 6.61
CHEMBL4762155 3 6.60
CHEMBL4776499 3 6.58
CHEMBL5774290 3 6.53
CHEMBL4744530 3 6.52
CHEMBL5984676 3 6.38
CHEMBL5880209 3 6.34
CHEMBL6021805 3 6.33
CHEMBL5882928 3 6.23
CHEMBL5974818 3 6.20
CHEMBL5905973 3 6.04
CHEMBL4756198 3 5.73
CHEMBL4744426 3 5.56

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4779515 IC50 = 51.0 nM 7.29
CHEMBL5805028 IC50 = 67.0 nM 7.17
CHEMBL5941358 IC50 = 72.0 nM 7.14
CHEMBL6025254 IC50 = 96.0 nM 7.02
CHEMBL4785547 IC50 = 129.0 nM 6.89
CHEMBL4743240 IC50 = 132.0 nM 6.88
CHEMBL5996110 IC50 = 135.0 nM 6.87
CHEMBL4761354 IC50 = 140.0 nM 6.85
CHEMBL5891191 IC50 = 163.0 nM 6.79
CHEMBL4754606 IC50 = 172.0 nM 6.76
CHEMBL4743194 IC50 = 180.0 nM 6.75
CHEMBL5814430 IC50 = 186.0 nM 6.73
CHEMBL5936099 IC50 = 192.0 nM 6.72
CHEMBL5962798 IC50 = 200.0 nM 6.70
CHEMBL6024193 IC50 = 202.0 nM 6.70
CHEMBL4799007 IC50 = 231.0 nM 6.64
CHEMBL4785348 IC50 = 237.0 nM 6.62
CHEMBL5774457 IC50 = 246.0 nM 6.61
CHEMBL4762155 IC50 = 251.0 nM 6.60
CHEMBL4776499 IC50 = 265.0 nM 6.58
CHEMBL5774290 IC50 = 293.0 nM 6.53
CHEMBL4744530 IC50 = 303.0 nM 6.52
CHEMBL5984676 IC50 = 421.0 nM 6.38
CHEMBL5880209 IC50 = 457.0 nM 6.34
CHEMBL6021805 IC50 = 468.0 nM 6.33
CHEMBL5882928 IC50 = 589.0 nM 6.23
CHEMBL5974818 IC50 = 631.0 nM 6.20
CHEMBL5905973 IC50 = 911.0 nM 6.04
CHEMBL4756198 IC50 = 1869.0 nM 5.73
CHEMBL4744426 IC50 = 2742.0 nM 5.56
CHEMBL5780174 IC50 = 3438.0 nM 5.46
CHEMBL5969964 IC50 = 4721.0 nM 5.33
CHEMBL6021805 k_off = - s-1 -
CHEMBL5974818 k_off = - s-1 -
CHEMBL5962798 kon = - -
CHEMBL5974818 kon = - -
CHEMBL5905973 kon = - -
CHEMBL5774457 k_off = - s-1 -
CHEMBL5774457 kon = - -
CHEMBL5969964 kon = - -
CHEMBL5969964 k_off = - s-1 -
CHEMBL6024193 k_off = - s-1 -
CHEMBL5774290 kon = - -
CHEMBL6024193 kon = - -
CHEMBL5774290 k_off = - s-1 -
CHEMBL5814430 kon = - -
CHEMBL5996110 k_off = - s-1 -
CHEMBL5996110 kon = - -
CHEMBL5814430 k_off = - s-1 -
CHEMBL5962798 k_off = - s-1 -