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Assay Detail

CHEMBL5735494

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
High-Throughput Screening Assay: Day 1Step 1. Add 50 μl anti-mDial (1:160 dilution in 0.1M NaHCO3 pH 9.6)/well. Incubate overnight at 4° C.Day 2Step 2. Use the plate washer to aspirate anti-mDial and wash plates 4× with PBS 100 μl per well per wash.Step 3. Add 180 μl 3% BSA in 1×PBS. Incubate for 1.5 hrs at room temperatureStep 4. Use the plate washer to aspirate the blocking solution and wash 5× with PBS 300 μl per well.Step 5. Add 50 μl of mDial containing lysate (85 μg) and incubate at RT for 3 hours.Step 6. Aspirate the lysate and wash the plate 5× (100 μl) on the plate washer.Step 7. Add 25 μl PBS to the wells.Step 8. Add 0.5 μL compound per well.Step 9. Add 24.5 μL GFP RAGE tail (125 nM) into each well for 2 hrs at room temperature.Step 10. Aspirate and wash 5× with PBS (100 μL) on the plate washer.Step 11. Add 100 ul PBS in each well.Step 12. Detection: Read on fluorescence plate reader excitation 435 nm and 485 nm emissionCompounds that blocked the binding of RAGE tail to mDial by 50% or more were subjected to 4 point dose response: 10 μM, 1 μM, 0.1 μM and 0.01 μM.Compounds that showed dose dependence were then subjected to secondary screen:Kd DeterminationsA number of representative amino and amido compounds of this invention were or can be tested for their inhibitory activity. The amino and amido compounds of the invention along with their available Kd values, as determined using conventional methods to those skilled in the art, are listed below in Table 1.
87
Total Activities
29
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Publication

Amino, amido and heterocyclic compounds as modulators of RAGE activity and uses thereof
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
Kd 29 6.86 10.00
kon 29 - -
k_off 29 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4101927 3 10.00
CHEMBL1335502 3 9.26
CHEMBL4077165 3 8.96
CHEMBL1342645 3 8.92
CHEMBL6043937 3 8.85
CHEMBL5815349 3 8.70
CHEMBL4072531 3 8.70
CHEMBL4100986 3 8.51
CHEMBL4075539 3 8.40
CHEMBL1463447 3 8.40
CHEMBL5812329 3 8.19
CHEMBL1477694 3 7.75
CHEMBL6008871 3 7.12
CHEMBL1566222 3 7.11
CHEMBL1547178 3 6.91
CHEMBL6022471 3 6.30
CHEMBL5996836 3 5.00
CHEMBL5800273 3 5.00
CHEMBL6047793 3 5.00
CHEMBL5837900 3 5.00
CHEMBL6026172 3 5.00
CHEMBL1705167 3 5.00
CHEMBL5764678 3 5.00
CHEMBL1306807 3 5.00
CHEMBL6024523 3 5.00
CHEMBL5834491 3 5.00
CHEMBL5863716 3 5.00
CHEMBL5903550 3 5.00
CHEMBL1328917 3 -

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4101927 Kd = 0.1 nM 10.00
CHEMBL1335502 Kd = 0.55 nM 9.26
CHEMBL4077165 Kd = 1.1 nM 8.96
CHEMBL1342645 Kd = 1.2 nM 8.92
CHEMBL6043937 Kd = 1.4 nM 8.85
CHEMBL5815349 Kd = 2.0 nM 8.70
CHEMBL4072531 Kd = 2.0 nM 8.70
CHEMBL4100986 Kd = 3.1 nM 8.51
CHEMBL4075539 Kd = 4.0 nM 8.40
CHEMBL1463447 Kd = 4.0 nM 8.40
CHEMBL5812329 Kd = 6.5 nM 8.19
CHEMBL1477694 Kd = 18.0 nM 7.75
CHEMBL6008871 Kd = 75.0 nM 7.12
CHEMBL1566222 Kd = 78.0 nM 7.11
CHEMBL1547178 Kd = 123.0 nM 6.91
CHEMBL6022471 Kd = 500.0 nM 6.30
CHEMBL5996836 Kd = 10000.0 nM 5.00
CHEMBL6024523 Kd = 10000.0 nM 5.00
CHEMBL5863716 Kd = 10000.0 nM 5.00
CHEMBL5834491 Kd = 10000.0 nM 5.00
CHEMBL1306807 Kd = 10000.0 nM 5.00
CHEMBL6047793 Kd = 10000.0 nM 5.00
CHEMBL6026172 Kd = 10000.0 nM 5.00
CHEMBL1705167 Kd = 10000.0 nM 5.00
CHEMBL5903550 Kd = 10000.0 nM 5.00
CHEMBL5800273 Kd = 10000.0 nM 5.00
CHEMBL5764678 Kd = 10000.0 nM 5.00
CHEMBL5837900 Kd = 10000.0 nM 5.00
CHEMBL1566222 k_off = - s-1 -
CHEMBL1705167 k_off = - s-1 -
CHEMBL5837900 kon = - -
CHEMBL5837900 k_off = - s-1 -
CHEMBL6024523 k_off = - s-1 -
CHEMBL6024523 kon = - -
CHEMBL6026172 kon = - -
CHEMBL6026172 k_off = - s-1 -
CHEMBL1306807 k_off = - s-1 -
CHEMBL1306807 kon = - -
CHEMBL1705167 kon = - -
CHEMBL5834491 kon = - -
CHEMBL6047793 k_off = - s-1 -
CHEMBL5834491 k_off = - s-1 -
CHEMBL5764678 k_off = - s-1 -
CHEMBL6047793 kon = - -
CHEMBL6008871 k_off = - s-1 -
CHEMBL5863716 kon = - -
CHEMBL5863716 k_off = - s-1 -
CHEMBL4075539 k_off = - s-1 -
CHEMBL4075539 kon = - -
CHEMBL1566222 kon = - -