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Assay Detail

CHEMBL5735971

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Binding
Electrophysiological Assay: Patch voltage clamp electrophysiology allows for the direct measurement and quantification of block of voltage-gated sodium channels (Nay's), and allows the determination of the time- and voltage-dependence of block which has been interpreted as differential binding to the resting, open, and inactivated states of the sodium channel (Hille, B., Journal of General Physiology (1977), 69: 497-515).The following patch voltage clamp electrophysiology studies were performed on representative compounds of the invention using human embryonic kidney cells (HEK), permanently transfected with an expression vector containing the full-length cDNA coding for the desired human sodium channel α-subunit, grown in culture media containing 10% FBS, 1% PSG, and 0.5 mg/mL G418 at 37° C. with 5% CO2. HEK cells used for the electrophysiology (EP) recordings had a passage number of less than 40 for all studies and were used within three days from the time of plating. NaV1.1, NaV1.5 and NaV1.6 cDNAs (NM_001165964 (SCN1A), NM_000335 (SCN5A) and NM_014191 (SCN8A), respectively) were stably expressed in HEK-293 cells.Sodium currents were measured using the patch clamp technique in the whole-cell configuration using either a PatchXpress automated voltage clamp or manually using an Axopatch 200B (Axon Instruments) or Model 2400 (A-M systems) amplifier. The manual voltage clamp protocol was as follows: Borosilicate glass micropipettes were fire-polished to a tip diameter yielding a resistance of 2-4 Mohms in the working solutions. The pipette was filled with a solution comprised of: 5 mM NaCl, 10 mM CsCl, 120 mM CsF, 0.1 mM CaCl2, 2 mM MgCl2, 10 mM HEPES, 10 mM EGTA; and adjusted to pH 7.2 with CsOH. The external solution had the following composition: 140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES; and adjusted to pH 7.4 with NaOH. In some studies, the external sodium was reduced by equimolar replacement with choline. Osmolarity in the CsF internal and NaCl external solutions was adjusted to 300 mOsm/kg and 310 mOsm/kg with glucose, respectively. All recordings were performed at ambient temperature in a bath chamber with a volume of 150 μL. Control sodium currents were measured in 0.5% DMSO. Controls and representative compounds of the invention were applied to the recording chamber through a 4-pinch or 8-pinch valve bath perfusion system manufactured by ALA Scientific Instruments.Currents were recorded at 40 kHz sampling frequency, filtered at 5 Hz, and stored using a Digidata-1322A analogue/digital interface with the pClamp software (Axon Instruments). Series resistance compensation was applied (60-80%). Cells were rejected if currents showed inadequate voltage control (as judged by the IV relationship during stepwise activation). All statistics in this study are given as mean±SD.The membrane potential was maintained at a voltage where inactivation of the channel is complete. The voltage is then stepped back to a very negative (Vhold=−150 mV) voltage for 20 ms and then a test pulse is applied to quantify the compound block. The 20 ms brief repolarization was long enough for compound-free channels to completely recover from fast inactivation, but the compound-bound channels recovered more slowly such that negligible recovery could occur during this interval. The percent decrease in sodium current following wash-on of compound was taken as the percent block of sodium channels.
243
Total Activities
80
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Sodium channel protein type 8 subunit alpha (CHEMBL5202)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Benzenesulfonamide compounds and their use as therapeutic agents
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 81 6.78 9.00
kon 81 - -
k_off 81 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5833484 3 9.00
CHEMBL5871830 3 8.70
CHEMBL5818848 3 8.30
CHEMBL5954138 3 8.10
CHEMBL6030566 3 7.96
CHEMBL5994683 3 7.96
CHEMBL5949590 3 7.92
CHEMBL5802504 3 7.77
CHEMBL5923842 3 7.60
CHEMBL5789241 3 7.57
CHEMBL5964606 3 7.54
CHEMBL5954783 3 7.52
CHEMBL5782612 3 7.50
CHEMBL5775615 6 7.47
CHEMBL6008536 3 7.44
CHEMBL5900702 3 7.44
CHEMBL6018738 3 7.43
CHEMBL5794376 3 7.41
CHEMBL5843543 3 7.37
CHEMBL4650313 ZANDATRIGINE 2.0 3 7.27
CHEMBL6049108 3 7.25
CHEMBL5768504 3 7.22
CHEMBL5800801 3 7.18
CHEMBL6016377 3 7.16
CHEMBL5868649 3 7.16
CHEMBL6004228 3 7.09
CHEMBL5972633 3 7.09
CHEMBL5979774 3 7.05
CHEMBL5785083 3 7.04
CHEMBL5870397 3 7.04

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5833484 IC50 = 1.0 nM 9.00
CHEMBL5871830 IC50 = 2.0 nM 8.70
CHEMBL5818848 IC50 = 5.0 nM 8.30
CHEMBL5954138 IC50 = 8.0 nM 8.10
CHEMBL5994683 IC50 = 11.0 nM 7.96
CHEMBL6030566 IC50 = 11.0 nM 7.96
CHEMBL5949590 IC50 = 12.0 nM 7.92
CHEMBL5802504 IC50 = 17.0 nM 7.77
CHEMBL5923842 IC50 = 25.0 nM 7.60
CHEMBL5789241 IC50 = 27.0 nM 7.57
CHEMBL5964606 IC50 = 29.0 nM 7.54
CHEMBL5954783 IC50 = 30.0 nM 7.52
CHEMBL5782612 IC50 = 32.0 nM 7.50
CHEMBL5775615 IC50 = 34.0 nM 7.47
CHEMBL5900702 IC50 = 36.0 nM 7.44
CHEMBL6008536 IC50 = 36.0 nM 7.44
CHEMBL6018738 IC50 = 37.0 nM 7.43
CHEMBL5794376 IC50 = 39.0 nM 7.41
CHEMBL5843543 IC50 = 43.0 nM 7.37
CHEMBL4650313 ZANDATRIGINE IC50 = 54.0 nM 7.27
CHEMBL6049108 IC50 = 56.0 nM 7.25
CHEMBL5768504 IC50 = 60.0 nM 7.22
CHEMBL5800801 IC50 = 66.0 nM 7.18
CHEMBL5868649 IC50 = 70.0 nM 7.16
CHEMBL6016377 IC50 = 70.0 nM 7.16
CHEMBL6004228 IC50 = 81.0 nM 7.09
CHEMBL5972633 IC50 = 82.0 nM 7.09
CHEMBL5979774 IC50 = 89.0 nM 7.05
CHEMBL5870397 IC50 = 91.0 nM 7.04
CHEMBL5785083 IC50 = 92.0 nM 7.04
CHEMBL5789636 IC50 = 93.0 nM 7.03
CHEMBL5989155 IC50 = 98.0 nM 7.01
CHEMBL5741776 IC50 = 110.0 nM 6.96
CHEMBL6044714 IC50 = 124.0 nM 6.91
CHEMBL5930034 IC50 = 138.0 nM 6.86
CHEMBL5744359 IC50 = 138.0 nM 6.86
CHEMBL6018773 IC50 = 137.0 nM 6.86
CHEMBL6031260 IC50 = 137.0 nM 6.86
CHEMBL5891805 IC50 = 144.0 nM 6.84
CHEMBL5775615 IC50 = 151.0 nM 6.82
CHEMBL6010629 IC50 = 150.0 nM 6.82
CHEMBL5942568 IC50 = 152.0 nM 6.82
CHEMBL5963590 IC50 = 155.0 nM 6.81
CHEMBL5979760 IC50 = 164.0 nM 6.79
CHEMBL5779277 IC50 = 164.0 nM 6.79
CHEMBL5938511 IC50 = 170.0 nM 6.77
CHEMBL6041373 IC50 = 177.0 nM 6.75
CHEMBL5883842 IC50 = 268.0 nM 6.57
CHEMBL5845321 IC50 = 278.0 nM 6.56
CHEMBL5955998 IC50 = 278.0 nM 6.56