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Assay Detail

CHEMBL5736765

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Binding
LOX Enzyme Activity Assay: The following reagents were prepared:Reagents500 mM CHES, pH 9 (with NaOH), filtered (MW=207.29)20.7 g in 200 ml in dH2O10% Pluronic F-127 (store at 4° C.)1 g in 10 ml in dH2O10 % BSA (store at 4° C.)−2.5 g in 25 ml dH2O1 M MgCl2.6H2O (MW=203)5.1 g in 25 ml dH2O5 M Urea (MW=60.06)60 g in 200 ml dH2O5 M NaCl (MW=58.44)14.6 g in 50 ml dH2O8.5 M Cadaverine Dihydrochloride (MW=175.10): Sigma, Cat No: C85611.49 g in 1 ml dH2O10 mM Na3VO4, pH 10 (with HCl), boil to activate (MW=183.91): Sigma, Cat No: S65080.1839 g in 10 ml dH2O20 mM Amplex Red (MW=257.25): Invitrogen, Cat No: A12222.5 mg in 1 ml DMSO (aliquot into 40 μl and store at −20° C.)1000 U/ml HRP in dH2O (store at 4° C.): Sigma, Cat No: P2088H2O2 (store at 4° C.): Sigma, Cat No: H1009DMSOLOX Assay Buffer: Volume (μl) Reagent 1 × plate Final Concn 500 mM CHES, pH 9 5000 100 mM 10% Pluronic F-127 125 0.05% 10% BSA 1250 0.5% 1M MgCl2 25  1 mM 5M Urea 5000 1M 5M NaCl 500 100 mM dH2O 13100 — Total Volume 25 000 —Inhibitors (Test Compounds):10 mM stock diluted to 10, 3, 1, 0.3, 0.1, 0.03, 0.01, 0.003, 0.001, and 0.0003 mM in drug plate, resulting in a concentration of 100, 30, 10, 3, 1, 0.3, 0.1, 0.03, 0.01, and 0.003 uM in the assay.LOX enzyme:LOX enzyme was obtained from pig skin by the method of Shackleton et al 1990.Assay Plates:Black, flat bottom 96 well platesProcedure:1. Dilute LOX enzyme in Assay Buffer (˜4 ml for one plate, 8 ml for two plates) (dilution dependent on batch activity)2. Add 0.5 μl test compound serial dilutions, in duplicate3. Add 0.5 μl serial dilutions of positive control, BAPN, down column 11 (no duplication)4. Add following controls: 0.5 μl DMSO (100% activity control)5. Cover plate and incubate for 20 min at room temperature on a plate shaker6. Prepare Start Mix: Volume Reagent 1 × plate 2 × plate Final Concn Assay Buffer 2 ml 3 ml — 8.5M Cadaverine 23 μl 34.5 μl 97.8 mM 20 mM Amplex Red 10 μl 15 μl 100 μM 1000 U/ml HRP 10 μl 15 μl 5 U/ml7. Add 10 μl Start Mix to No HRP control wells8. Add HRP to the Start Mix. Add 10 ul to all wells EXCEPT No HRP control wells9. Incubate for 45 min at room temp on a plate shaker, protected from light10. Measure fluorescence using a plate reader: Excitation wavelength: 545 nm Emission wavelength: 585 nm HRP Counter Assay Protocol1. Dilute 5 μl H2O2 in 640 μl dH2O. Add 1 μl diluted H2O2 to 10 ml Assay Buffer. Vortex2. Add 40 μl H2O2+Assay Buffer into every well on the counter assay plate EXCEPT no H2O2 control wells (add 40 μl Assay Buffer only)3. Add 0.5 μl test compound serial dilutions, in duplicate4. Add 0.5 μl serial dilutions of positive control, Na3VO4, down column 11 (no duplication)5. Add following controls: 0.5 μl DMSO (100% activity control) 1 μl diluted H2O2 (blow out control)6. Incubate for 20 min at room temp on a plate shaker.
273
Total Activities
89
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Protein-lysine 6-oxidase (CHEMBL2249)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Methylamine derivatives as lysysl oxidase inhibitors for the treatment of cancer
(2021)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 91 5.78 6.52
kon 91 - -
k_off 91 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4596739 3 6.52
CHEMBL4458145 3 6.47
CHEMBL4596503 3 6.40
CHEMBL4536193 3 6.38
CHEMBL4596022 3 6.36
CHEMBL4597756 3 6.35
CHEMBL4596599 3 6.35
CHEMBL4595977 3 6.33
CHEMBL4535726 3 6.32
CHEMBL4453938 3 6.29
CHEMBL4597283 3 6.28
CHEMBL4597684 3 6.26
CHEMBL4595499 3 6.23
CHEMBL4526964 6 6.21
CHEMBL4597541 3 6.16
CHEMBL4595271 3 6.14
CHEMBL4596703 3 6.13
CHEMBL4597281 3 6.12
CHEMBL4528500 3 6.11
CHEMBL4536971 3 6.11
CHEMBL4553578 3 6.09
CHEMBL4598164 3 6.08
CHEMBL4441173 3 6.05
CHEMBL4595035 3 6.04
CHEMBL4594630 3 6.04
CHEMBL4459355 3 6.03
CHEMBL4571822 3 6.00
CHEMBL4443558 6 6.00
CHEMBL4596864 3 5.96
CHEMBL4596225 3 5.96

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4596739 IC50 = 300.0 nM 6.52
CHEMBL4458145 IC50 = 340.0 nM 6.47
CHEMBL4596503 IC50 = 400.0 nM 6.40
CHEMBL4536193 IC50 = 420.0 nM 6.38
CHEMBL4596022 IC50 = 440.0 nM 6.36
CHEMBL4597756 IC50 = 450.0 nM 6.35
CHEMBL4596599 IC50 = 450.0 nM 6.35
CHEMBL4595977 IC50 = 470.0 nM 6.33
CHEMBL4535726 IC50 = 480.0 nM 6.32
CHEMBL4453938 IC50 = 510.0 nM 6.29
CHEMBL4597283 IC50 = 530.0 nM 6.28
CHEMBL4597684 IC50 = 550.0 nM 6.26
CHEMBL4595499 IC50 = 590.0 nM 6.23
CHEMBL4526964 IC50 = 620.0 nM 6.21
CHEMBL4597541 IC50 = 690.0 nM 6.16
CHEMBL4595271 IC50 = 720.0 nM 6.14
CHEMBL4596703 IC50 = 740.0 nM 6.13
CHEMBL4597281 IC50 = 760.0 nM 6.12
CHEMBL4536971 IC50 = 770.0 nM 6.11
CHEMBL4528500 IC50 = 770.0 nM 6.11
CHEMBL4553578 IC50 = 820.0 nM 6.09
CHEMBL4598164 IC50 = 830.0 nM 6.08
CHEMBL4441173 IC50 = 890.0 nM 6.05
CHEMBL4594630 IC50 = 910.0 nM 6.04
CHEMBL4595035 IC50 = 910.0 nM 6.04
CHEMBL4459355 IC50 = 930.0 nM 6.03
CHEMBL4571822 IC50 = 1000.0 nM 6.00
CHEMBL4443558 IC50 = 1000.0 nM 6.00
CHEMBL4596225 IC50 = 1100.0 nM 5.96
CHEMBL4594816 IC50 = 1100.0 nM 5.96
CHEMBL4541757 IC50 = 1100.0 nM 5.96
CHEMBL4564517 IC50 = 1100.0 nM 5.96
CHEMBL4596864 IC50 = 1100.0 nM 5.96
CHEMBL4469765 IC50 = 1200.0 nM 5.92
CHEMBL4596616 IC50 = 1300.0 nM 5.89
CHEMBL4596124 IC50 = 1400.0 nM 5.85
CHEMBL4526964 IC50 = 1400.0 nM 5.85
CHEMBL4457629 IC50 = 1400.0 nM 5.85
CHEMBL4597883 IC50 = 1400.0 nM 5.85
CHEMBL4472713 IC50 = 1500.0 nM 5.82
CHEMBL4595976 IC50 = 1500.0 nM 5.82
CHEMBL4456651 IC50 = 1600.0 nM 5.80
CHEMBL4440126 IC50 = 1600.0 nM 5.80
CHEMBL4514950 IC50 = 1600.0 nM 5.80
CHEMBL4597051 IC50 = 1600.0 nM 5.80
CHEMBL4448066 IC50 = 1700.0 nM 5.77
CHEMBL4483383 IC50 = 1700.0 nM 5.77
CHEMBL4595498 IC50 = 1800.0 nM 5.75
CHEMBL4597755 IC50 = 1800.0 nM 5.75
CHEMBL4594698 IC50 = 1800.0 nM 5.75