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Assay Detail

CHEMBL5737565

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Binding
Electrophysiological Assay (In Vitro Assay): Patch voltage clamp electrophysiology allows for the direct measurement and quantification of block of voltage-gated sodium channels (NaV's), and allows the determination of the time- and voltage-dependence of block which has been interpreted as differential binding to the resting, open, and inactivated states of the sodium channel (Hille, B., Journal of General Physiology (1977), 69: 497-515).The following patch voltage clamp electrophysiology studies were performed on representative compounds of the invention using human embryonic kidney cells (HEK), permanently transfected with an expression vector containing the full-length cDNA coding for the desired human sodium channel α-subunit, grown in culture media containing 10% FBS, 1% PSG, and 0.5 mg/mL G418 at 37° C. with 5% CO2. HEK cells used for the electrophysiology (EP) recordings had a passage number of less than 40 for all studies and were used within three days from the time of plating. NaV1.1, NaV1.5 and NaV1.6 cDNAs (NM_001165964 (SCN1A), NM_000335 (SCN5A) and NM_014191 (SCN8A), respectively) were stably expressed in HEK-293 cells.Sodium currents were measured using the patch clamp technique in the whole-cell configuration using either a PatchXpress automated voltage clamp or manually using an Axopatch 200B (Axon Instruments) or Model 2400 (A-M systems) amplifier. The manual voltage clamp protocol was as follows: Borosilicate glass micropipettes were fire-polished to a tip diameter yielding a resistance of 2-4 Mohms in the working solutions. The pipette was filled with a solution comprised of: 5 mM NaCl, 10 mM CsCl, 120 mM CsF, 0.1 mM CaCl2, 2 mM MgCl2, 10 mM HEPES, 10 mM EGTA; and adjusted to pH 7.2 with CsOH. The external solution had the following composition: 140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES; and adjusted to pH 7.4 with NaOH. In some studies, the external sodium was reduced by equimolar replacement with choline. Osmolarity in the CsF internal and NaC external solutions was adjusted to 300 mOsm/kg and 310 mOsm/kg with glucose, respectively. All recordings were performed at ambient temperature in a bath chamber with a volume of 150 μL. Control sodium currents were measured in 0.5% DMSO. Controls and representative compounds of the invention were applied to the recording chamber through a 4-pinch or 8-pinch valve bath perfusion system manufactured by ALA Scientific Instruments.Currents were recorded at 40 kHz sampling frequency, filtered at 5 Hz, and stored using a Digidata-1322A analogue/digital interface with the pClamp software (Axon Instruments). Series resistance compensation was applied (60-80%). Cells were rejected if currents showed inadequate voltage control (as judged by the IV relationship during stepwise activation). All statistics in this study are given as mean±SD.The membrane potential was maintained at a voltage where inactivation of the channel is complete. The voltage is then stepped back to a very negative (Vhold=−150 mV) voltage for 20 ms and then a test pulse is applied to quantify the compound block. The 20 ms brief repolarization was long enough for compound-free channels to completely recover from fast inactivation, but the compound-bound channels recovered more slowly such that negligible recovery could occur during this interval. The percent decrease in sodium current following wash-on of compound was taken as the percent block of sodium channels.
402
Total Activities
134
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Sodium channel protein type 8 subunit alpha (CHEMBL5202)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Benzenesulfonamide compouds and their use as therapeutic agents
(2021)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 134 7.13 9.00
kon 134 - -
k_off 134 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL6011164 3 9.00
CHEMBL5742330 3 9.00
CHEMBL5860643 3 8.70
CHEMBL5956982 3 8.70
CHEMBL5748509 3 8.52
CHEMBL5764406 3 8.40
CHEMBL5953924 3 8.40
CHEMBL5765991 3 8.00
CHEMBL5884546 3 8.00
CHEMBL5756729 3 8.00
CHEMBL5817529 3 8.00
CHEMBL5893806 3 7.96
CHEMBL5818306 3 7.96
CHEMBL5856264 3 7.96
CHEMBL5953595 3 7.92
CHEMBL5876162 3 7.92
CHEMBL5831980 3 7.89
CHEMBL5983021 3 7.82
CHEMBL5902754 3 7.82
CHEMBL5924319 3 7.82
CHEMBL5890093 3 7.75
CHEMBL5990486 3 7.75
CHEMBL5765898 3 7.72
CHEMBL6059398 3 7.68
CHEMBL5964201 3 7.66
CHEMBL5751008 3 7.64
CHEMBL5830349 3 7.64
CHEMBL5979941 3 7.64
CHEMBL4468899 3 7.62
CHEMBL6050574 3 7.62

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL6011164 IC50 = 1.0 nM 9.00
CHEMBL5742330 IC50 = 1.0 nM 9.00
CHEMBL5860643 IC50 = 2.0 nM 8.70
CHEMBL5956982 IC50 = 2.0 nM 8.70
CHEMBL5748509 IC50 = 3.0 nM 8.52
CHEMBL5764406 IC50 = 4.0 nM 8.40
CHEMBL5953924 IC50 = 4.0 nM 8.40
CHEMBL5884546 IC50 = 10.0 nM 8.00
CHEMBL5765991 IC50 = 10.0 nM 8.00
CHEMBL5756729 IC50 = 10.0 nM 8.00
CHEMBL5817529 IC50 = 10.0 nM 8.00
CHEMBL5893806 IC50 = 11.0 nM 7.96
CHEMBL5818306 IC50 = 11.0 nM 7.96
CHEMBL5856264 IC50 = 11.0 nM 7.96
CHEMBL5953595 IC50 = 12.0 nM 7.92
CHEMBL5876162 IC50 = 12.0 nM 7.92
CHEMBL5831980 IC50 = 13.0 nM 7.89
CHEMBL5902754 IC50 = 15.0 nM 7.82
CHEMBL5924319 IC50 = 15.0 nM 7.82
CHEMBL5983021 IC50 = 15.0 nM 7.82
CHEMBL5890093 IC50 = 18.0 nM 7.75
CHEMBL5990486 IC50 = 18.0 nM 7.75
CHEMBL5765898 IC50 = 19.0 nM 7.72
CHEMBL6059398 IC50 = 21.0 nM 7.68
CHEMBL5964201 IC50 = 22.0 nM 7.66
CHEMBL5751008 IC50 = 23.0 nM 7.64
CHEMBL5830349 IC50 = 23.0 nM 7.64
CHEMBL5979941 IC50 = 23.0 nM 7.64
CHEMBL4468899 IC50 = 24.0 nM 7.62
CHEMBL6050574 IC50 = 24.0 nM 7.62
CHEMBL5947438 IC50 = 25.0 nM 7.60
CHEMBL5938180 IC50 = 25.0 nM 7.60
CHEMBL5997921 IC50 = 26.0 nM 7.58
CHEMBL5745944 IC50 = 27.0 nM 7.57
CHEMBL5824877 IC50 = 27.0 nM 7.57
CHEMBL6043611 IC50 = 28.0 nM 7.55
CHEMBL6047300 IC50 = 31.0 nM 7.51
CHEMBL5842264 IC50 = 31.0 nM 7.51
CHEMBL4444000 IC50 = 33.0 nM 7.48
CHEMBL5880062 IC50 = 34.0 nM 7.47
CHEMBL5853440 IC50 = 34.0 nM 7.47
CHEMBL5969547 IC50 = 36.0 nM 7.44
CHEMBL5921209 IC50 = 36.0 nM 7.44
CHEMBL5839777 IC50 = 37.0 nM 7.43
CHEMBL4530743 IC50 = 37.0 nM 7.43
CHEMBL5927344 IC50 = 38.0 nM 7.42
CHEMBL5755592 IC50 = 39.0 nM 7.41
CHEMBL6055897 IC50 = 41.0 nM 7.39
CHEMBL5869085 IC50 = 41.0 nM 7.39
CHEMBL5750717 IC50 = 41.0 nM 7.39