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Assay Detail

CHEMBL5737567

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Binding
Electrophysiological Assay (In Vitro Assay): Patch voltage clamp electrophysiology allows for the direct measurement and quantification of block of voltage-gated sodium channels (NaV's), and allows the determination of the time- and voltage-dependence of block which has been interpreted as differential binding to the resting, open, and inactivated states of the sodium channel (Hille, B., Journal of General Physiology (1977), 69: 497-515).The following patch voltage clamp electrophysiology studies were performed on representative compounds of the invention using human embryonic kidney cells (HEK), permanently transfected with an expression vector containing the full-length cDNA coding for the desired human sodium channel α-subunit, grown in culture media containing 10% FBS, 1% PSG, and 0.5 mg/mL G418 at 37° C. with 5% CO2. HEK cells used for the electrophysiology (EP) recordings had a passage number of less than 40 for all studies and were used within three days from the time of plating. NaV1.1, NaV1.5 and NaV1.6 cDNAs (NM_001165964 (SCN1A), NM_000335 (SCN5A) and NM_014191 (SCN8A), respectively) were stably expressed in HEK-293 cells.Sodium currents were measured using the patch clamp technique in the whole-cell configuration using either a PatchXpress automated voltage clamp or manually using an Axopatch 200B (Axon Instruments) or Model 2400 (A-M systems) amplifier. The manual voltage clamp protocol was as follows: Borosilicate glass micropipettes were fire-polished to a tip diameter yielding a resistance of 2-4 Mohms in the working solutions. The pipette was filled with a solution comprised of: 5 mM NaCl, 10 mM CsCl, 120 mM CsF, 0.1 mM CaCl2, 2 mM MgCl2, 10 mM HEPES, 10 mM EGTA; and adjusted to pH 7.2 with CsOH. The external solution had the following composition: 140 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM HEPES; and adjusted to pH 7.4 with NaOH. In some studies, the external sodium was reduced by equimolar replacement with choline. Osmolarity in the CsF internal and NaC external solutions was adjusted to 300 mOsm/kg and 310 mOsm/kg with glucose, respectively. All recordings were performed at ambient temperature in a bath chamber with a volume of 150 μL. Control sodium currents were measured in 0.5% DMSO. Controls and representative compounds of the invention were applied to the recording chamber through a 4-pinch or 8-pinch valve bath perfusion system manufactured by ALA Scientific Instruments.Currents were recorded at 40 kHz sampling frequency, filtered at 5 Hz, and stored using a Digidata-1322A analogue/digital interface with the pClamp software (Axon Instruments). Series resistance compensation was applied (60-80%). Cells were rejected if currents showed inadequate voltage control (as judged by the IV relationship during stepwise activation). All statistics in this study are given as mean±SD.The membrane potential was maintained at a voltage where inactivation of the channel is complete. The voltage is then stepped back to a very negative (Vhold=−150 mV) voltage for 20 ms and then a test pulse is applied to quantify the compound block. The 20 ms brief repolarization was long enough for compound-free channels to completely recover from fast inactivation, but the compound-bound channels recovered more slowly such that negligible recovery could occur during this interval. The percent decrease in sodium current following wash-on of compound was taken as the percent block of sodium channels.
39
Total Activities
13
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

Sodium channel protein type 5 subunit alpha (CHEMBL1980)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Benzenesulfonamide compouds and their use as therapeutic agents
(2021)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 13 4.87 5.42
kon 13 - -
k_off 13 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4552363 3 5.42
CHEMBL5831980 3 5.29
CHEMBL5819561 3 5.00
CHEMBL4468899 3 5.00
CHEMBL5953924 3 5.00
CHEMBL5869085 3 5.00
CHEMBL5919815 3 5.00
CHEMBL5839777 3 4.84
CHEMBL4580996 3 4.70
CHEMBL5927344 3 4.52
CHEMBL5959237 3 4.52
CHEMBL6047300 3 4.52
CHEMBL5893806 3 4.52

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4552363 IC50 = 3822.0 nM 5.42
CHEMBL5831980 IC50 = 5151.0 nM 5.29
CHEMBL5819561 IC50 = 10000.0 nM 5.00
CHEMBL5919815 IC50 = 10000.0 nM 5.00
CHEMBL5953924 IC50 = 10000.0 nM 5.00
CHEMBL4468899 IC50 = 10000.0 nM 5.00
CHEMBL5869085 IC50 = 10000.0 nM 5.00
CHEMBL5839777 IC50 = 14280.0 nM 4.84
CHEMBL4580996 IC50 = 20000.0 nM 4.70
CHEMBL5959237 IC50 = 30000.0 nM 4.52
CHEMBL6047300 IC50 = 30000.0 nM 4.52
CHEMBL5927344 IC50 = 30000.0 nM 4.52
CHEMBL5893806 IC50 = 30000.0 nM 4.52
CHEMBL5927344 k_off = - s-1 -
CHEMBL5839777 k_off = - s-1 -
CHEMBL5839777 kon = - -
CHEMBL4552363 k_off = - s-1 -
CHEMBL4552363 kon = - -
CHEMBL5953924 k_off = - s-1 -
CHEMBL5953924 kon = - -
CHEMBL5831980 k_off = - s-1 -
CHEMBL5831980 kon = - -
CHEMBL4468899 k_off = - s-1 -
CHEMBL4468899 kon = - -
CHEMBL5819561 k_off = - s-1 -
CHEMBL5819561 kon = - -
CHEMBL5959237 kon = - -
CHEMBL5959237 k_off = - s-1 -
CHEMBL5893806 kon = - -
CHEMBL5919815 k_off = - s-1 -
CHEMBL5919815 kon = - -
CHEMBL4580996 kon = - -
CHEMBL6047300 k_off = - s-1 -
CHEMBL6047300 kon = - -
CHEMBL4580996 k_off = - s-1 -
CHEMBL5869085 k_off = - s-1 -
CHEMBL5869085 kon = - -
CHEMBL5893806 k_off = - s-1 -
CHEMBL5927344 kon = - -