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Assay Detail

CHEMBL5739463

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Binding
Competitive Radioligand Binding Assay: The affinity of candidate sigma-2 ligand compounds at sigma-1 and sigma-2 receptors was also determined by displacement of different known labeled sigma-2 or sigma-1 ligands. Filtration assays were conducted according the previously published procedure (Xu, et al., 2005). Test compounds were dissolved in N,N-Dimethylformamide (DMF), dimethyl sulfoxide (DMSO) or ethanol and then diluted in 50 mM Tris-HCl pH 7.4 buffer containing 150 mM NaCl and 100 mM EDTA. Membrane homogenates were made from guinea pig brain for sigma-1 binding assay and rat liver for sigma-2 binding assay. Membrane homogenates were diluted with 50 mM Tris-HCl buffer, pH 8.0 and incubated at 25° C. in a total volume of 150 uL in 96 well plates with the radioligand and test compounds with concentrations ranging from 0.1 nM to 10 uM. After incubation was completed, the reactions were terminated by the addition of 150 uL of ice-cold wash buffer (10 mM Tris HCl, 150 mM NaCl, pH 7.4) using a 96 channel transfer pipette (Fisher Scientific, Pittsburgh, Pa.) and the samples harvested and filtered rapidly through 96 well fiber glass filter plate (Millipore, Billerica, Mass.) that had been presoaked with 100 uL of 50 mM Tris-HCl buffer. Each filter was washed four times with 200 uL of ice-cold wash buffer (10 mM Tris-HCl, 150 mM NaCl, pH 7.4). A Wallac 1450 MicroBeta liquid scintillation counter (Perkin Elmer, Boston, Mass.) was used to quantitate the bound radioactivity. The sigma-1 receptor binding assays were conducted using guinea pig brain membrane homogenates (˜300 ug protein) and ˜5 nM [3H](+)-pentazocine (34.9 Ci/mmol, Perkin Elmer, Boston, Mass.), incubation time was 90 min at room temperature. Nonspecific binding was determined from samples that contained 10 μM of cold haloperidol. The sigma-2 receptor binding assays were conducted using rat liver membrane homogenates (˜300 ug protein) and ˜2 nM sigma-2 highly selective radioligand [3H]RHM-1 only (no other blockers) (America Radiolabeled Chemicals Inc. St. Louis, Mo.), ˜10 nM [3H]DTG (58.1 Ci/mmol, Perkin Elmer, Boston, Mass.) or ˜10 nM [3H]Haloperidol (America Radiolabeled Chemicals Inc., St. Louis, Mo.) in the presence of 1 uM (+)-pentazocine to block sigma-1 sites, incubation times were 6 minutes for [3H]RHM-1, 120 min for [3H]DTG and [3H]haloperidol at room temperature. Nonspecific binding was determined from samples that contained 10 uM of cold haloperidol.
279
Total Activities
93
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

Isoindoline compositions and methods for treating neurodegenerative disease
(2023)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
Ki 93 7.20 9.36
kon 93 - -
k_off 93 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4853196 3 9.36
CHEMBL5928382 3 9.28
CHEMBL5979974 3 9.17
CHEMBL6040331 3 8.96
CHEMBL5960929 3 8.89
CHEMBL6047114 3 8.85
CHEMBL5982604 3 8.82
CHEMBL6015644 3 8.74
CHEMBL5945487 3 8.74
CHEMBL5811349 3 8.66
CHEMBL5899919 3 8.59
CHEMBL5744962 3 8.59
CHEMBL5815237 3 8.57
CHEMBL5946543 3 8.49
CHEMBL5975554 3 8.44
CHEMBL6056346 3 8.44
CHEMBL5990621 3 8.30
CHEMBL5823135 3 8.28
CHEMBL5841969 3 8.21
CHEMBL5919694 3 8.18
CHEMBL5777736 3 8.16
CHEMBL5770059 3 8.09
CHEMBL4846092 3 8.07
CHEMBL6026313 3 8.07
CHEMBL5931677 3 8.05
CHEMBL6030456 3 8.05
CHEMBL4867297 3 7.96
CHEMBL5799278 3 7.96
CHEMBL5864724 3 7.92
CHEMBL5934082 3 7.89

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4853196 Ki = 0.44 nM 9.36
CHEMBL5928382 Ki = 0.53 nM 9.28
CHEMBL5979974 Ki = 0.67 nM 9.17
CHEMBL6040331 Ki = 1.1 nM 8.96
CHEMBL5960929 Ki = 1.3 nM 8.89
CHEMBL6047114 Ki = 1.4 nM 8.85
CHEMBL5982604 Ki = 1.5 nM 8.82
CHEMBL5945487 Ki = 1.8 nM 8.74
CHEMBL6015644 Ki = 1.8 nM 8.74
CHEMBL5811349 Ki = 2.2 nM 8.66
CHEMBL5899919 Ki = 2.6 nM 8.59
CHEMBL5744962 Ki = 2.6 nM 8.59
CHEMBL5815237 Ki = 2.7 nM 8.57
CHEMBL5946543 Ki = 3.2 nM 8.49
CHEMBL5975554 Ki = 3.6 nM 8.44
CHEMBL6056346 Ki = 3.6 nM 8.44
CHEMBL5990621 Ki = 5.0 nM 8.30
CHEMBL5823135 Ki = 5.2 nM 8.28
CHEMBL5841969 Ki = 6.2 nM 8.21
CHEMBL5919694 Ki = 6.6 nM 8.18
CHEMBL5777736 Ki = 6.9 nM 8.16
CHEMBL5770059 Ki = 8.1 nM 8.09
CHEMBL6026313 Ki = 8.6 nM 8.07
CHEMBL4846092 Ki = 8.5 nM 8.07
CHEMBL6030456 Ki = 8.9 nM 8.05
CHEMBL5931677 Ki = 9.0 nM 8.05
CHEMBL4867297 Ki = 11.0 nM 7.96
CHEMBL5799278 Ki = 11.0 nM 7.96
CHEMBL5864724 Ki = 12.0 nM 7.92
CHEMBL5934082 Ki = 13.0 nM 7.89
CHEMBL5879895 Ki = 13.0 nM 7.89
CHEMBL5832234 Ki = 15.0 nM 7.82
CHEMBL5866374 Ki = 17.0 nM 7.77
CHEMBL5793914 Ki = 18.0 nM 7.75
CHEMBL6010674 Ki = 21.0 nM 7.68
CHEMBL5861338 Ki = 21.0 nM 7.68
CHEMBL5750888 Ki = 22.0 nM 7.66
CHEMBL5946331 Ki = 23.0 nM 7.64
CHEMBL6030320 Ki = 25.0 nM 7.60
CHEMBL6047079 Ki = 25.0 nM 7.60
CHEMBL5882024 Ki = 31.0 nM 7.51
CHEMBL5872171 Ki = 32.0 nM 7.50
CHEMBL5796179 Ki = 37.0 nM 7.43
CHEMBL5755473 Ki = 38.0 nM 7.42
CHEMBL6057860 Ki = 41.0 nM 7.39
CHEMBL5818991 Ki = 52.0 nM 7.28
CHEMBL6002762 Ki = 58.0 nM 7.24
CHEMBL6064287 Ki = 57.0 nM 7.24
CHEMBL5995733 Ki = 68.0 nM 7.17
CHEMBL6016888 Ki = 71.0 nM 7.15