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Assay Detail

CHEMBL3705252

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
HDAC Inhbition Assay: Assay was done in 96-well black microplate and total volume of the assay was 100 pt. Mouse liver enzyme (10 mg/ml) was diluted 1:6 with HDAC buffer. Enzyme cocktail was made of 10 μL of diluted enzyme and 30 μL of HDAC buffer. 40 μl of enzyme cocktail followed by 10 μL of test compound (1 μM and 10 μM) or buffer (control) was added to each well. The plate was pre-incubated at 37° C. for 5 minutes. The HDAC reaction was started by adding 50 μl of HDAC substrate Boc-Lys (Ac)-AMC (Bachem AG, Switzerland). The plate was incubated at 37° C. for 30 min. The reaction was stopped by adding 100 μL, of Trypsin stop solution and incubating at 37° C. for 15-30 min. Measuring the fluorescence at excitation wavelength of 360 nm and emission wavelength of 460 nm monitored the release of AMC. Buffer alone and substrate alone served as blank.
38
Total Activities
30
Compounds Tested
1
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Mus musculus
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Histone deacetylase 1 (CHEMBL4001)
Type SINGLE PROTEIN
Organism Mus musculus

Publication

Histone deacetylase inhibitors
(2013)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 38 6.55 8.00

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3647947 1 8.00
CHEMBL3647948 1 8.00
CHEMBL3647935 1 7.70
CHEMBL3647943 1 7.52
CHEMBL3647938 1 7.52
CHEMBL3644947 2 7.44
CHEMBL3647946 1 7.40
CHEMBL3647944 1 7.40
CHEMBL3647937 1 7.40
CHEMBL3647934 1 7.40
CHEMBL3644942 2 7.38
CHEMBL3644946 2 7.30
CHEMBL3647940 1 7.30
CHEMBL3644950 2 7.28
CHEMBL3644949 2 7.27
CHEMBL3644948 2 7.24
CHEMBL3644954 1 7.22
CHEMBL3647941 1 7.22
CHEMBL3647939 1 7.22
CHEMBL3644945 2 7.21
CHEMBL3647949 1 7.16
CHEMBL3647936 1 7.16
CHEMBL3644943 2 6.82
CHEMBL3647945 1 6.62
CHEMBL3644953 1 6.48
CHEMBL3647942 1 6.42
CHEMBL3644944 1 5.50
CHEMBL3644941 1 5.42
CHEMBL3644952 1 5.30
CHEMBL3644951 1 5.11

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3647947 IC50 = 10.0 nM 8.00
CHEMBL3647948 IC50 = 10.0 nM 8.00
CHEMBL3647935 IC50 = 20.0 nM 7.70
CHEMBL3647938 IC50 = 30.0 nM 7.52
CHEMBL3647943 IC50 = 30.0 nM 7.52
CHEMBL3644947 IC50 = 36.0 nM 7.44
CHEMBL3647946 IC50 = 40.0 nM 7.40
CHEMBL3647937 IC50 = 40.0 nM 7.40
CHEMBL3647934 IC50 = 40.0 nM 7.40
CHEMBL3647944 IC50 = 40.0 nM 7.40
CHEMBL3644942 IC50 = 42.0 nM 7.38
CHEMBL3647940 IC50 = 50.0 nM 7.30
CHEMBL3644946 IC50 = 50.0 nM 7.30
CHEMBL3644950 IC50 = 52.0 nM 7.28
CHEMBL3644949 IC50 = 54.0 nM 7.27
CHEMBL3644948 IC50 = 57.0 nM 7.24
CHEMBL3647939 IC50 = 60.0 nM 7.22
CHEMBL3647941 IC50 = 60.0 nM 7.22
CHEMBL3644954 IC50 = 60.0 nM 7.22
CHEMBL3644945 IC50 = 62.0 nM 7.21
CHEMBL3647949 IC50 = 70.0 nM 7.16
CHEMBL3647936 IC50 = 70.0 nM 7.16
CHEMBL3644943 IC50 = 150.0 nM 6.82
CHEMBL3647945 IC50 = 240.0 nM 6.62
CHEMBL3644953 IC50 = 330.0 nM 6.48
CHEMBL3647942 IC50 = 380.0 nM 6.42
CHEMBL3644944 IC50 = 3200.0 nM 5.50
CHEMBL3644941 IC50 = 3800.0 nM 5.42
CHEMBL3644950 IC50 = 4800.0 nM 5.32
CHEMBL3644952 IC50 = 5000.0 nM 5.30
CHEMBL3644951 IC50 = 7800.0 nM 5.11
CHEMBL3644949 IC50 = 7900.0 nM 5.10
CHEMBL3644942 IC50 = 8600.0 nM 5.07
CHEMBL3644947 IC50 = 9500.0 nM 5.02
CHEMBL3644943 IC50 = 19000.0 nM 4.72
CHEMBL3644946 IC50 = 20000.0 nM 4.70
CHEMBL3644948 IC50 = 34000.0 nM 4.47
CHEMBL3644945 IC50 = 82000.0 nM 4.09