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Assay Detail

CHEMBL3887699

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
Inhibition Assay: A rapid plate DNA synthesis assay was performed using optimized conditions. Briefly, a 1.2:1 ratio of a 20-mer oligonucleotide primer (5′-GCGAATGAATGACCGCTGAC-3′, SEQ ID No. 1) and a 5′-end biotinylated 100-mer oligonucleotide template (5′-Biotin-AGCACTATTGACATTACAGAGTCGCCTTGGCTCTCTGGCTGTTCGTTGCGGGCTCCGCG TGCGTTGGCTTCGGTCGTCCCGTCAGCGGTCATTCATTGGC-3′) were annealed and loaded into a 96-well microtiter streptavidin-coated plate (Streptawell plates, Roche Applied Science, Indianapolis, Ind., USA) at 5 pmol/well. The wells were incubated at 37 C for 90 min, and washed with 100 L PBS. The reaction was conducted in low salt buffer (20 mM Tris-HCl pH 7.4, 3 mM MgCl2, 0.1 mM EDTA, 0.5 mM DTT, 2% glycerol, 40 ug/mL BSA, 5 uM dNTPs, 1 uM digoxigenin-11-2′-deoxyuridine-5′-triphosphate (DIG-dUTP, Roche Applied Science) with 1 μL vaccinia infected cell lysate or 1 uL of in vitro translated E9 DNA polymerase. The reaction plates were incubated at 37° C
35
Total Activities
35
Compounds Tested
1
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

DNA polymerase (CHEMBL3988586)
Type SINGLE PROTEIN
Organism Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strainWR))

Publication

Therapeutic compounds for blocking DNA synthesis of POX viruses
(2015)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 35 5.06 6.30

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL494487 1 6.30
CHEMBL494691 1 5.89
CHEMBL494692 1 5.52
CHEMBL493889 1 5.46
CHEMBL561169 1 5.42
CHEMBL523191 1 5.40
CHEMBL493863 1 5.39
CHEMBL446815 1 5.30
CHEMBL522887 1 5.28
CHEMBL492418 1 5.27
CHEMBL494668 1 5.23
CHEMBL494669 1 5.22
CHEMBL343732 1 5.20
CHEMBL523359 1 5.17
CHEMBL493866 1 5.14
CHEMBL493435 1 5.13
CHEMBL495496 1 5.13
CHEMBL523375 1 5.00
CHEMBL494474 1 5.00
CHEMBL492467 1 4.92
CHEMBL524172 1 4.58
CHEMBL3963648 1 4.58
CHEMBL500836 1 4.52
CHEMBL504977 1 4.50
CHEMBL494725 1 4.37
CHEMBL494931 1 4.34
CHEMBL492887 1 4.28
CHEMBL522197 1 4.12
CHEMBL445205 1 -
CHEMBL526118 1 -

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL494487 IC50 = 500.0 nM 6.30
CHEMBL494691 IC50 = 1300.0 nM 5.89
CHEMBL494692 IC50 = 3000.0 nM 5.52
CHEMBL493889 IC50 = 3500.0 nM 5.46
CHEMBL561169 IC50 = 3800.0 nM 5.42
CHEMBL523191 IC50 = 4000.0 nM 5.40
CHEMBL493863 IC50 = 4100.0 nM 5.39
CHEMBL446815 IC50 = 5000.0 nM 5.30
CHEMBL522887 IC50 = 5300.0 nM 5.28
CHEMBL492418 IC50 = 5400.0 nM 5.27
CHEMBL494668 IC50 = 5900.0 nM 5.23
CHEMBL494669 IC50 = 6000.0 nM 5.22
CHEMBL343732 IC50 = 6300.0 nM 5.20
CHEMBL523359 IC50 = 6700.0 nM 5.17
CHEMBL493866 IC50 = 7300.0 nM 5.14
CHEMBL493435 IC50 = 7400.0 nM 5.13
CHEMBL495496 IC50 = 7400.0 nM 5.13
CHEMBL523375 IC50 = 10000.0 nM 5.00
CHEMBL494474 IC50 = 10000.0 nM 5.00
CHEMBL492467 IC50 = 12000.0 nM 4.92
CHEMBL524172 IC50 = 26000.0 nM 4.58
CHEMBL3963648 IC50 = 26000.0 nM 4.58
CHEMBL500836 IC50 = 30000.0 nM 4.52
CHEMBL504977 IC50 = 32000.0 nM 4.50
CHEMBL494725 IC50 = 43000.0 nM 4.37
CHEMBL494931 IC50 = 46000.0 nM 4.34
CHEMBL492887 IC50 = 52000.0 nM 4.28
CHEMBL522197 IC50 = 75000.0 nM 4.12
CHEMBL445205 IC50 = 239000.0 nM -
CHEMBL526118 IC50 = 111000.0 nM -
CHEMBL492473 IC50 = 188000.0 nM -
CHEMBL522832 IC50 = 129000.0 nM -
CHEMBL492466 IC50 = 131000.0 nM -
CHEMBL523663 IC50 = 374000.0 nM -
CHEMBL492267 IC50 = 108000.0 nM -