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Assay Detail

CHEMBL5733599

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Binding
Cell-based activity under Prompt Conditions: Cell-based activity under Prompt Conditions. Rat or human NHE3-mediated Na+-dependent H+ antiport was measured using a modification of the pH sensitive dye method originally reported by Paradiso (PNAS USA. 81:7436-7440, 1984). Opossum kidney (OK) cells were obtained from the ATCC and propagated per their instructions. The rat NHE3 gene (GenBank M85300) or the human NHE3 gene (GenBank NM_004174.1) was introduced into OK cells via electroporation, and cells were seeded into 96 well plates and grown overnight. Medium was aspirated from the wells, cells were washed twice with NaCl-HEPES buffer (100 mM NaCl, 50 mM HEPES, 10 mM glucose, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4), then incubated for 30 min at room temperature with NH4Cl-HEPES buffer (20 mM NH4Cl, 80 mM NaCl, 50 mM HEPES, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4) containing 5 μM bis(acetoxymethyl) 3,3′-(3′,6′-bis(acetoxymethoxy)-5-((acetoxymethoxy)carbonyl)-3-oxo-3H-spiro[isobenzofuran-1,9′-xanthene]-2′,7′-diyl)dipropanoate (BCECF-AM).Cells were washed twice with Ammonium free, Na+-free HEPES (100 mM choline, 50 mM HEPES, 10 mM glucose, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4) and incubated in the same buffer for 10 minutes at room temperature to lower intracellular pH. NHE3-mediated recovery of neutral intracellular pH was initiated by addition of Na-HEPES buffer containing 0.4 μM ethyl isopropyl amiloride (EIPA, a selective antagonist of NHE-1 activity that does not inhibit NHE3) and 0-30 μM test compound, or a pharmaceutically acceptable salt thereof, and monitoring the pH sensitive changes in BCECF fluorescence (λex 505 nm, λem, 538 nm) normalized to the pH insensitive BCECF fluorescence (λex 439 nm, λem, 538 nm). Initial rates were plotted as the average 2 or more replicates, and pIC50 values were estimated using GraphPad Prism.
513
Total Activities
166
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Sodium/hydrogen exchanger 3 (CHEMBL3273)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

NHE3-binding compounds and methods for inhibiting phosphate transport
(2019)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 171 7.55 8.70
kon 171 - -
k_off 171 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3942614 3 8.70
CHEMBL3987020 3 8.70
CHEMBL5845250 3 8.58
CHEMBL5861528 3 8.55
CHEMBL3954388 3 8.55
CHEMBL3937928 3 8.53
CHEMBL3921641 3 8.50
CHEMBL3972753 3 8.45
CHEMBL3968950 3 8.40
CHEMBL3956501 3 8.40
CHEMBL5815625 3 8.40
CHEMBL3967281 3 8.40
CHEMBL4279223 3 8.37
CHEMBL3976345 6 8.35
CHEMBL3979252 3 8.35
CHEMBL3972891 3 8.30
CHEMBL3304485 TENAPANOR 4.0 6 8.30
CHEMBL3891308 3 8.30
CHEMBL3911722 3 8.30
CHEMBL3909990 3 8.30
CHEMBL3903230 3 8.30
CHEMBL5977305 3 8.30
CHEMBL3965836 3 8.25
CHEMBL5747985 3 8.20
CHEMBL6026005 3 8.20
CHEMBL5828476 3 8.20
CHEMBL5948265 3 8.20
CHEMBL3908976 3 8.20
CHEMBL3908997 3 8.20
CHEMBL3909231 3 8.20

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3942614 IC50 = 2.0 nM 8.70
CHEMBL3987020 IC50 = 2.0 nM 8.70
CHEMBL5845250 IC50 = 2.63 nM 8.58
CHEMBL5861528 IC50 = 2.82 nM 8.55
CHEMBL3954388 IC50 = 2.82 nM 8.55
CHEMBL3937928 IC50 = 2.95 nM 8.53
CHEMBL3921641 IC50 = 3.16 nM 8.50
CHEMBL3972753 IC50 = 3.55 nM 8.45
CHEMBL3967281 IC50 = 3.98 nM 8.40
CHEMBL3968950 IC50 = 3.98 nM 8.40
CHEMBL3956501 IC50 = 3.98 nM 8.40
CHEMBL5815625 IC50 = 3.98 nM 8.40
CHEMBL4279223 IC50 = 4.27 nM 8.37
CHEMBL3976345 IC50 = 4.47 nM 8.35
CHEMBL3979252 IC50 = 4.47 nM 8.35
CHEMBL3903230 IC50 = 5.01 nM 8.30
CHEMBL3972891 IC50 = 5.01 nM 8.30
CHEMBL3911722 IC50 = 5.01 nM 8.30
CHEMBL3891308 IC50 = 5.01 nM 8.30
CHEMBL5977305 IC50 = 5.01 nM 8.30
CHEMBL3909990 IC50 = 5.01 nM 8.30
CHEMBL3304485 TENAPANOR IC50 = 5.01 nM 8.30
CHEMBL3965836 IC50 = 5.62 nM 8.25
CHEMBL5828476 IC50 = 6.31 nM 8.20
CHEMBL6026005 IC50 = 6.31 nM 8.20
CHEMBL3909231 IC50 = 6.31 nM 8.20
CHEMBL3908976 IC50 = 6.31 nM 8.20
CHEMBL5948265 IC50 = 6.31 nM 8.20
CHEMBL3908997 IC50 = 6.31 nM 8.20
CHEMBL5846806 IC50 = 6.31 nM 8.20
CHEMBL5747985 IC50 = 6.31 nM 8.20
CHEMBL4294068 IC50 = 7.41 nM 8.13
CHEMBL3911951 IC50 = 7.41 nM 8.13
CHEMBL3935315 IC50 = 7.94 nM 8.10
CHEMBL3985915 IC50 = 7.94 nM 8.10
CHEMBL5899780 IC50 = 7.94 nM 8.10
CHEMBL3951502 IC50 = 7.94 nM 8.10
CHEMBL3978115 IC50 = 7.94 nM 8.10
CHEMBL3970997 IC50 = 7.94 nM 8.10
CHEMBL3897301 IC50 = 7.94 nM 8.10
CHEMBL3972691 IC50 = 7.94 nM 8.10
CHEMBL3976660 IC50 = 10.0 nM 8.00
CHEMBL3897251 IC50 = 10.0 nM 8.00
CHEMBL3990220 IC50 = 10.0 nM 8.00
CHEMBL3941108 IC50 = 10.0 nM 8.00
CHEMBL3304485 TENAPANOR IC50 = 10.0 nM 8.00
CHEMBL5923279 IC50 = 10.0 nM 8.00
CHEMBL5989386 IC50 = 10.0 nM 8.00
CHEMBL3930643 IC50 = 10.0 nM 8.00
CHEMBL3986598 IC50 = 11.7 nM 7.93