Skip to main content
Free research Free research Free assay review with research home and workspace preview
Quick search ChEMBL 36
Assay Detail

CHEMBL5733663

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
PDE2 Assay A: The activity of the compounds in accordance with the present invention as PDE2 inhibitors may be readily determined using a fluorescence polarization (FP) methodology (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). In particular, the compounds of the following examples had activity in reference assays by exhibiting the ability to inhibit the hydrolysis of the phosphate ester bond of a cyclic nucleotide. Any compound exhibiting a Ki (inhibitory constant) of about 50 μM or below would be considered a PDE2 inhibitor as defined herein. The PDE2 inhibitory activity of the compounds of the present invention was determined in accordance with the following experimental method. Rhesus PDE2A3 was amplified from rhesus macaque brain cDNA (Biochain Institute, Hayward, Calif.) using primers based on human PDE2A sequence (accession NM_002599.3) where the forward primer containing a Kozak consensus was 5′-gccaccatggggcaggcatgtggc-3′ and the reverse primer was 5′-tcactcagcatcaaggctgca-3′. Amplification with Easy-A High-Fidelity PCR cloning enzyme (Stratagene, La Jolla, Calif.) was 95° C. for 2 minutes followed by thirty three cycles of 95° C. for 40 seconds, 52° C. for 30 seconds, and 72° C. for 2 minutes 48 seconds. Final extension was 72° C. for 7 minutes. The PCR product was TA cloned into pcDNA3.3-TOPO (Invitrogen, Carlsbad, Calif.) according to standard protocol. A consensus sequence was developed from multiple clones and then deposited into GenBank (EU812167). AD293 cells (Stratagene, La Jolla, Calif.) with 70-80% confluency were transiently transfected with rhesus PDE2A3/pcDNA3.3-TOPO using Lipofectamine 2000 according to manufacturer specifications (Invitrogen, Carlsbad, Calif.). Cells were harvested 48 hours post-transfection and lysed by sonication (setting 3, 10×5 sec pulses) in a buffer containing 20 mM HEPES pH 7.4, 1 mM EDTA and Complete Protease Inhibitor Cocktail Tablets (Roche, Indianapolis, Ind.). Lysate was collected by centrifugation at 75,000×g for 20 minutes at 4° C. and supernatant utilized for evaluation of PDE2 activity. The fluorescence polarization assay for cyclic nucleotide phosphodiesterases was performed using an IMAP® FP kit supplied by Molecular Devices, Sunnyvale, Calif. (product #R8139). IMAP® technology has been applied previously to examine the effects of phosphodiesterase inhibitors (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). Assays were performed at room temperature in 384-well microtiter plates with an incubation volume of 20.2 μL. Solutions of test compounds were prepared in DMSO and serially diluted with DMSO to yield 8 μL of each of 10 solutions differing by 3-fold in concentration, at 32 serial dilutions per plate. 100% inhibition is determined using a known PDE2 inhibitor, which can be any compound that is present at 5,000 times its Ki value in the assay described below, such as Bay 60-7550 (Ki-˜0.2 nM) at 1 μM concentration for 100% inhibition. Bay 60-7550 was obtained from Axxora via Fisher Scientific (cat# ALX-270-421-M025/cat# NC9314773). Put another way, any compound with Ki of ˜0.2 to about 2 nM could be used at 1 to 10 μM. 0% of inhibition is determined by using DMSO (1% final concentrations). The measurements are done in Laboratory A.
291
Total Activities
97
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Publication

Pyrimidinone amide compounds as PDE2 inhibitors
(2019)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
Ki 97 8.03 9.72
kon 97 - -
k_off 97 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL6041006 3 9.72
CHEMBL3977461 3 9.72
CHEMBL5895407 3 9.62
CHEMBL5809581 3 9.57
CHEMBL5848252 3 9.48
CHEMBL6044602 3 9.44
CHEMBL5801656 3 9.44
CHEMBL5886285 3 9.41
CHEMBL5775806 3 9.39
CHEMBL6042555 3 9.38
CHEMBL5882238 3 9.37
CHEMBL5820837 3 9.32
CHEMBL5859775 3 9.32
CHEMBL5860058 3 9.29
CHEMBL6055052 3 9.27
CHEMBL5919583 3 9.27
CHEMBL5841838 3 9.25
CHEMBL5764572 3 9.25
CHEMBL5794149 3 9.24
CHEMBL3980015 3 9.24
CHEMBL5932982 3 9.21
CHEMBL3933723 3 9.21
CHEMBL5849386 3 9.19
CHEMBL5949614 3 9.18
CHEMBL5754077 3 9.16
CHEMBL5958606 3 9.16
CHEMBL5826588 3 9.09
CHEMBL5871219 3 9.09
CHEMBL6031207 3 9.07
CHEMBL5807876 3 9.04

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3977461 Ki = 0.19 nM 9.72
CHEMBL6041006 Ki = 0.19 nM 9.72
CHEMBL5895407 Ki = 0.24 nM 9.62
CHEMBL5809581 Ki = 0.27 nM 9.57
CHEMBL5848252 Ki = 0.33 nM 9.48
CHEMBL6044602 Ki = 0.36 nM 9.44
CHEMBL5801656 Ki = 0.36 nM 9.44
CHEMBL5886285 Ki = 0.39 nM 9.41
CHEMBL5775806 Ki = 0.41 nM 9.39
CHEMBL6042555 Ki = 0.42 nM 9.38
CHEMBL5882238 Ki = 0.43 nM 9.37
CHEMBL5859775 Ki = 0.48 nM 9.32
CHEMBL5820837 Ki = 0.48 nM 9.32
CHEMBL5860058 Ki = 0.51 nM 9.29
CHEMBL5919583 Ki = 0.54 nM 9.27
CHEMBL6055052 Ki = 0.54 nM 9.27
CHEMBL5841838 Ki = 0.56 nM 9.25
CHEMBL5764572 Ki = 0.56 nM 9.25
CHEMBL3980015 Ki = 0.57 nM 9.24
CHEMBL5794149 Ki = 0.58 nM 9.24
CHEMBL3933723 Ki = 0.61 nM 9.21
CHEMBL5932982 Ki = 0.62 nM 9.21
CHEMBL5849386 Ki = 0.64 nM 9.19
CHEMBL5949614 Ki = 0.66 nM 9.18
CHEMBL5754077 Ki = 0.69 nM 9.16
CHEMBL5958606 Ki = 0.69 nM 9.16
CHEMBL5871219 Ki = 0.82 nM 9.09
CHEMBL5826588 Ki = 0.81 nM 9.09
CHEMBL6031207 Ki = 0.85 nM 9.07
CHEMBL5807876 Ki = 0.91 nM 9.04
CHEMBL5989195 Ki = 0.94 nM 9.03
CHEMBL5995584 Ki = 0.93 nM 9.03
CHEMBL6038523 Ki = 1.0 nM 9.00
CHEMBL5988781 Ki = 1.1 nM 8.96
CHEMBL5794602 Ki = 1.1 nM 8.96
CHEMBL3889667 Ki = 1.2 nM 8.92
CHEMBL5856172 Ki = 1.3 nM 8.89
CHEMBL5844850 Ki = 1.3 nM 8.89
CHEMBL5917982 Ki = 1.4 nM 8.85
CHEMBL6011661 Ki = 1.6 nM 8.80
CHEMBL5997029 Ki = 2.0 nM 8.70
CHEMBL5868317 Ki = 2.4 nM 8.62
CHEMBL5755259 Ki = 2.5 nM 8.60
CHEMBL5946890 Ki = 2.5 nM 8.60
CHEMBL5782219 Ki = 2.5 nM 8.60
CHEMBL5786722 Ki = 4.0 nM 8.40
CHEMBL5928936 Ki = 4.1 nM 8.39
CHEMBL5898157 Ki = 4.3 nM 8.37
CHEMBL5817786 Ki = 4.5 nM 8.35
CHEMBL6009631 Ki = 4.7 nM 8.33