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Assay Detail

CHEMBL5733666

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Binding
PDE2 Assay B: The activity of the compounds in accordance with the present invention as PDE2 inhibitors may be readily determined using a fluorescence polarization (FP) methodology (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). In particular, the compounds of the following examples had activity in reference assays by exhibiting the ability to inhibit the hydrolysis of the phosphate ester bond of a cyclic nucleotide. Any compound exhibiting a Ki (inhibitory constant) of about 50 μM or below would be considered a PDE2 inhibitor as defined herein. The PDE2 inhibitory activity of the compounds of the present invention was determined in accordance with the following experimental method. Rhesus PDE2A3 was amplified from rhesus macaque brain cDNA (Biochain Institute, Hayward, Calif.) using primers based on human PDE2A sequence (accession NM_002599.3) where the forward primer containing a Kozak consensus was 5′-gccaccatggggcaggcatgtggc-3′ and the reverse primer was 5′-tcactcagcatcaaggctgca-3′. Amplification with Easy-A High-Fidelity PCR cloning enzyme (Stratagene, La Jolla, Calif.) was 95° C. for 2 minutes followed by thirty three cycles of 95° C. for 40 seconds, 52° C. for 30 seconds, and 72° C. for 2 minutes 48 seconds. Final extension was 72° C. for 7 minutes. The PCR product was TA cloned into pcDNA3.3-TOPO (Invitrogen, Carlsbad, Calif.) according to standard protocol. A consensus sequence was developed from multiple clones and then deposited into GenBank (EU812167). AD293 cells (Stratagene, La Jolla, Calif.) with 70-80% confluency were transiently transfected with rhesus PDE2A3/pcDNA3.3-TOPO using Lipofectamine 2000 according to manufacturer specifications (Invitrogen, Carlsbad, Calif.). Cells were harvested 48 hours post-transfection and lysed by sonication (setting 3, 10×5 sec pulses) in a buffer containing 20 mM HEPES pH 7.4, 1 mM EDTA and Complete Protease Inhibitor Cocktail Tablets (Roche, Indianapolis, Ind.). Lysate was collected by centrifugation at 75,000×g for 20 minutes at 4° C. and supernatant utilized for evaluation of PDE2 activity. The fluorescence polarization assay for cyclic nucleotide phosphodiesterases was performed using an IMAP® FP kit supplied by Molecular Devices, Sunnyvale, Calif. (product #R8139). IMAP® technology has been applied previously to examine the effects of phosphodiesterase inhibitors (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). Assays were performed at room temperature in 384-well microtiter plates with an incubation volume of 20.2 μL. Solutions of test compounds were prepared in DMSO and serially diluted with DMSO to yield 8 μL of each of 10 solutions differing by 3-fold in concentration, at 32 serial dilutions per plate. 100% inhibition is determined using a known PDE2 inhibitor, which can be any compound that is present at 5,000 times its Ki value in the assay described below, such as Bay 60-7550 (Ki-˜0.2 nM) at 1 μM concentration for 100% inhibition. Bay 60-7550 was obtained from Axxora via Fisher Scientific (cat# ALX-270-421-M025/cat# NC9314773). Put another way, any compound with Ki of ˜0.2 to about 2 nM could be used at 1 to 10 μM. 0% of inhibition is determined by using DMSO (1% final concentrations). The measurements are done in Laboratory B.
399
Total Activities
126
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

cGMP-dependent 3',5'-cyclic phosphodiesterase (CHEMBL2652)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Pyrimidinone amide compounds as PDE2 inhibitors
(2019)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
Ki 133 8.73 10.52
kon 133 - -
k_off 133 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5847109 3 10.52
CHEMBL5808459 3 10.14
CHEMBL5744255 3 9.96
CHEMBL5842060 3 9.96
CHEMBL5922620 3 9.92
CHEMBL5940967 3 9.92
CHEMBL5915385 3 9.92
CHEMBL3909845 3 9.92
CHEMBL5830637 3 9.89
CHEMBL5847051 3 9.85
CHEMBL6029690 3 9.82
CHEMBL5841509 6 9.82
CHEMBL5923682 3 9.77
CHEMBL5876913 3 9.77
CHEMBL5983284 3 9.72
CHEMBL5914375 3 9.70
CHEMBL5893947 3 9.68
CHEMBL5832995 3 9.68
CHEMBL6041006 3 9.59
CHEMBL5940446 3 9.54
CHEMBL5895407 3 9.54
CHEMBL6062307 3 9.51
CHEMBL5903585 3 9.49
CHEMBL5754459 3 9.47
CHEMBL5885004 6 9.47
CHEMBL5764808 3 9.44
CHEMBL3977461 3 9.43
CHEMBL5869850 3 9.42
CHEMBL5917371 6 9.42
CHEMBL5898167 3 9.41

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5847109 Ki = 0.03 nM 10.52
CHEMBL5808459 Ki = 0.073 nM 10.14
CHEMBL5842060 Ki = 0.11 nM 9.96
CHEMBL5744255 Ki = 0.11 nM 9.96
CHEMBL5940967 Ki = 0.12 nM 9.92
CHEMBL5915385 Ki = 0.12 nM 9.92
CHEMBL5922620 Ki = 0.12 nM 9.92
CHEMBL3909845 Ki = 0.12 nM 9.92
CHEMBL5830637 Ki = 0.13 nM 9.89
CHEMBL5847051 Ki = 0.14 nM 9.85
CHEMBL5841509 Ki = 0.15 nM 9.82
CHEMBL6029690 Ki = 0.15 nM 9.82
CHEMBL5923682 Ki = 0.17 nM 9.77
CHEMBL5876913 Ki = 0.17 nM 9.77
CHEMBL5983284 Ki = 0.19 nM 9.72
CHEMBL5914375 Ki = 0.2 nM 9.70
CHEMBL5832995 Ki = 0.21 nM 9.68
CHEMBL5893947 Ki = 0.21 nM 9.68
CHEMBL6041006 Ki = 0.26 nM 9.59
CHEMBL5940446 Ki = 0.29 nM 9.54
CHEMBL5895407 Ki = 0.29 nM 9.54
CHEMBL6062307 Ki = 0.31 nM 9.51
CHEMBL5903585 Ki = 0.32 nM 9.49
CHEMBL5885004 Ki = 0.34 nM 9.47
CHEMBL5754459 Ki = 0.34 nM 9.47
CHEMBL5764808 Ki = 0.36 nM 9.44
CHEMBL3977461 Ki = 0.37 nM 9.43
CHEMBL5869850 Ki = 0.38 nM 9.42
CHEMBL5917371 Ki = 0.38 nM 9.42
CHEMBL5892280 Ki = 0.39 nM 9.41
CHEMBL5898167 Ki = 0.39 nM 9.41
CHEMBL5859775 Ki = 0.42 nM 9.38
CHEMBL5939378 Ki = 0.44 nM 9.36
CHEMBL5769956 Ki = 0.44 nM 9.36
CHEMBL5848252 Ki = 0.45 nM 9.35
CHEMBL5917371 Ki = 0.46 nM 9.34
CHEMBL5797805 Ki = 0.47 nM 9.33
CHEMBL5764569 Ki = 0.51 nM 9.29
CHEMBL5903576 Ki = 0.51 nM 9.29
CHEMBL5921889 Ki = 0.52 nM 9.28
CHEMBL5848889 Ki = 0.52 nM 9.28
CHEMBL5794335 Ki = 0.54 nM 9.27
CHEMBL5809581 Ki = 0.55 nM 9.26
CHEMBL5860058 Ki = 0.61 nM 9.21
CHEMBL6044602 Ki = 0.63 nM 9.20
CHEMBL3933723 Ki = 0.69 nM 9.16
CHEMBL5991838 Ki = 0.76 nM 9.12
CHEMBL5745674 Ki = 0.75 nM 9.12
CHEMBL5928361 Ki = 0.79 nM 9.10
CHEMBL3980015 Ki = 0.82 nM 9.09