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Assay Detail

CHEMBL5734764

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Binding
Cell-Based Assay of NHE-3 Activity: Rat NHE-3-mediated Na+-dependent H+ antiport was measured using a modification of the pH sensitive dye method originally reported by Tsien (Proc. Natl. Acad. Sci. USA. (1984) 81(23): 7436-7440). Opossum kidney (OK) cells were obtained from the ATCC and propagated per their instructions. The rat NHE-3 gene was introduced into OK cells via electroporation, seeded into 96 well plates and grown overnight. Medium was aspirated from the wells, cells were washed twice with NaCl-HEPES buffer (100 mM NaCl, 50 mM HEPES, 10 mM glucose, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4), then incubated for 30 min at room temperature with NH4Cl-HEPES buffer (20 mM NH4Cl, 80 mM NaCl, 50 mM HEPES, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4) containing 5 uM BCECF-AM (Invitrogen). Cells were washed twice with Ammonium free, Na+-free HEPES (100 mM choline, 50 mM HEPES, 10 mM glucose, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, pH 7.4) and incubated in the same buffer for 10 minutes at room temperature to lower intracellular pH. NHE-3-mediated recovery of neutral intracellular pH was initiated by addition of Na-HEPES buffer containing 5 uM ethyl isopropyl amiloride (EIPA, a selective antagonist of NHE-1 activity that does not inhibit NHE-3) and 0-30 uM test compound, and monitoring the pH sensitive changes in BCECF fluorescence (ex 505 nm, λem 538 nm) normalized to the pH insensitive BCECF fluorescence (λex 439 nm, λem 538 nm). Initial rates were were plotted as the average 3-6 replicates, and pIC50 values were estimated using GraphPad Prism.
222
Total Activities
73
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

Compounds and methods for inhibiting NHE-mediated antiport in the treatment of disorders associated with fluid retention or salt overload and gastrointestinal tract disorders
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 74 6.19 6.50
kon 74 - -
k_off 74 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3894386 3 6.50
CHEMBL3980037 3 6.50
CHEMBL3920731 3 6.50
CHEMBL3978422 3 6.50
CHEMBL5804775 3 6.50
CHEMBL3939463 3 6.50
CHEMBL3962425 3 6.50
CHEMBL5808975 3 6.50
CHEMBL3898544 3 6.50
CHEMBL5994572 3 6.50
CHEMBL6015828 3 6.50
CHEMBL5841857 3 6.50
CHEMBL5942752 3 6.50
CHEMBL3901448 3 6.50
CHEMBL6008478 3 6.50
CHEMBL3936313 3 6.50
CHEMBL3927539 3 6.50
CHEMBL6042824 3 6.50
CHEMBL3976509 3 6.50
CHEMBL3936880 3 6.50
CHEMBL3915885 3 6.50
CHEMBL3933988 3 6.50
CHEMBL3960422 3 6.50
CHEMBL5940839 6 6.50
CHEMBL6035310 3 6.50
CHEMBL3901018 3 5.50
CHEMBL3970042 3 5.50
CHEMBL5806021 3 5.50
CHEMBL6006573 3 5.50
CHEMBL3933111 3 5.50

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3976509 IC50 = 316.0 nM 6.50
CHEMBL3939463 IC50 = 316.0 nM 6.50
CHEMBL3920731 IC50 = 316.0 nM 6.50
CHEMBL3978422 IC50 = 316.0 nM 6.50
CHEMBL3962425 IC50 = 316.0 nM 6.50
CHEMBL3980037 IC50 = 316.0 nM 6.50
CHEMBL5804775 IC50 = 316.0 nM 6.50
CHEMBL5808975 IC50 = 316.0 nM 6.50
CHEMBL3898544 IC50 = 316.0 nM 6.50
CHEMBL5994572 IC50 = 316.0 nM 6.50
CHEMBL6015828 IC50 = 316.0 nM 6.50
CHEMBL5841857 IC50 = 316.0 nM 6.50
CHEMBL5942752 IC50 = 316.0 nM 6.50
CHEMBL3901448 IC50 = 316.0 nM 6.50
CHEMBL3936880 IC50 = 316.0 nM 6.50
CHEMBL6042824 IC50 = 316.0 nM 6.50
CHEMBL3927539 IC50 = 316.0 nM 6.50
CHEMBL3915885 IC50 = 316.0 nM 6.50
CHEMBL3936313 IC50 = 316.0 nM 6.50
CHEMBL3933988 IC50 = 316.0 nM 6.50
CHEMBL3894386 IC50 = 316.0 nM 6.50
CHEMBL5940839 IC50 = 316.0 nM 6.50
CHEMBL3960422 IC50 = 316.0 nM 6.50
CHEMBL6008478 IC50 = 316.0 nM 6.50
CHEMBL6035310 IC50 = 316.0 nM 6.50
CHEMBL5988385 IC50 = 3162.0 nM 5.50
CHEMBL5961734 IC50 = 3162.0 nM 5.50
CHEMBL5795674 IC50 = 3162.0 nM 5.50
CHEMBL5890946 IC50 = 3162.0 nM 5.50
CHEMBL3933111 IC50 = 3162.0 nM 5.50
CHEMBL3912744 IC50 = 3162.0 nM 5.50
CHEMBL5194676 IC50 = 3162.0 nM 5.50
CHEMBL5806021 IC50 = 3162.0 nM 5.50
CHEMBL3970042 IC50 = 3162.0 nM 5.50
CHEMBL3901018 IC50 = 3162.0 nM 5.50
CHEMBL6006573 IC50 = 3162.0 nM 5.50
CHEMBL3942154 kon = - -
CHEMBL3942154 k_off = - s-1 -
CHEMBL3903758 k_off = - s-1 -
CHEMBL5826919 kon = - -
CHEMBL5826919 k_off = - s-1 -
CHEMBL3939463 kon = - -
CHEMBL3990887 IC50 < 100.0 nM -
CHEMBL3990220 kon = - -
CHEMBL3939463 k_off = - s-1 -
CHEMBL3903758 IC50 < 100.0 nM -
CHEMBL5947907 IC50 < 100.0 nM -
CHEMBL3934078 k_off = - s-1 -
CHEMBL5820405 kon = - -
CHEMBL3934078 kon = - -