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Assay Detail

CHEMBL5735436

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Binding
In Vitro Binding Assay: Newly synthesized compounds were first evaluated for binding potency toward S1P1 by a [32P]S1P competitive binding assay following published procedure (J. Rosenberg, H. Liu, Z. Tu, A practical process for the preparation of [32P]S1P and binding assay for S1P receptor ligands, Appl. Radiat. Isot. 102 (2015) 5-9), and using S1P as a reference compound. [32P]S1P was first prepared by incubating sphingosine and [γ-32P]ATP with sphingosine kinase 1 as previously reported (J. Rosenberg, H. Liu, Z. Tu, A practical process for the preparation of [32P]S1P and binding assay for S1P receptor ligands, Appl. Radiat. Isot. 102 (2015) 5-9). [32P]S1P was dissolved in DMSO, and then diluted in the assay buffer (50 mM HEPES-Na with 5 mM MgCl2, 1 mM CaCl2, and 0.5% fatty acid-free bovine serum albumin, pH=7.5). Compounds were dissolved in DMSO and diluted to different concentrations with assay buffer, followed by adding commercial cell membranes expressing recombinant human S1P receptors (1, 2, 3, 4, and 5) in the assay buffer at room temperature in 96-well plate. [32P]S1P solution was then added to give a final volume of 150 μL containing 0.1 nM of [32P]S1P and 1 μg of membrane protein per well. Competitive binding was performed for 60 min at room temperature and terminated by collecting the membranes onto 96-well glass fiber (GF/B) filtration plates (Millipore, Billerica, Mass.). Each filter was washed with 200 μL of assay buffer for five times. The filter bound radionuclide was measured by a Beckman LS3801 scintillation counter using Cherenkov counting. The reported IC50 values were calculated using the 4 parameter equation, least-square non-linear regression curve-fit, with GraphPad Prism software (GraphPad Software, Inc). Each assay was repeated at least three times with duplicate wells for each compound; the reported values (mean±SD, nM) are calculated from the average of all assays. Assays for compounds which showed no activity (IC50>1000 nM) were only repeated twice.
54
Total Activities
17
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Sphingosine 1-phosphate receptor 3 (CHEMBL3892)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Compositions for binding sphingosine-1-phosphate receptor 1 (S1P1), imaging of S1P1, and methods of use thereof
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 18 8.00 9.40
kon 18 - -
k_off 18 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL225155 3 9.40
CHEMBL5994988 3 6.60
CHEMBL5222733 6 -
CHEMBL5803554 3 -
CHEMBL5221901 3 -
CHEMBL5222527 3 -
CHEMBL371743 3 -
CHEMBL5792304 3 -
CHEMBL5222209 3 -
CHEMBL5194177 3 -
CHEMBL5981005 3 -
CHEMBL5221231 3 -
CHEMBL5936141 3 -
CHEMBL5806426 3 -
CHEMBL3403619 3 -
CHEMBL5963020 3 -
CHEMBL5803343 3 -

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL225155 IC50 = 0.4 nM 9.40
CHEMBL5994988 IC50 = 253.0 nM 6.60
CHEMBL5963020 kon = - -
CHEMBL5222209 IC50 > 1000.0 nM -
CHEMBL5963020 k_off = - s-1 -
CHEMBL5222527 kon = - -
CHEMBL225155 kon = - -
CHEMBL225155 k_off = - s-1 -
CHEMBL5222733 IC50 > 1000.0 nM -
CHEMBL5222733 kon = - -
CHEMBL5222733 k_off = - s-1 -
CHEMBL5803554 IC50 > 1000.0 nM -
CHEMBL5803554 kon = - -
CHEMBL5803554 k_off = - s-1 -
CHEMBL5221901 IC50 > 1000.0 nM -
CHEMBL5221901 kon = - -
CHEMBL5221901 k_off = - s-1 -
CHEMBL5222527 IC50 > 1000.0 nM -
CHEMBL5803343 k_off = - s-1 -
CHEMBL5222527 k_off = - s-1 -
CHEMBL371743 IC50 > 1000.0 nM -
CHEMBL371743 kon = - -
CHEMBL371743 k_off = - s-1 -
CHEMBL5792304 IC50 > 1000.0 nM -
CHEMBL5792304 kon = - -
CHEMBL5792304 k_off = - s-1 -
CHEMBL5221231 k_off = - s-1 -
CHEMBL5936141 kon = - -
CHEMBL5194177 kon = - -
CHEMBL5194177 k_off = - s-1 -
CHEMBL5222733 IC50 > 1000.0 nM -
CHEMBL5222733 kon = - -
CHEMBL5222733 k_off = - s-1 -
CHEMBL5981005 IC50 > 1000.0 nM -
CHEMBL5981005 kon = - -
CHEMBL5981005 k_off = - s-1 -
CHEMBL5221231 IC50 > 1000.0 nM -
CHEMBL5221231 kon = - -
CHEMBL5963020 IC50 > 1000.0 nM -
CHEMBL5936141 IC50 > 1000.0 nM -
CHEMBL5194177 IC50 > 1000.0 nM -
CHEMBL5936141 k_off = - s-1 -
CHEMBL5994988 kon = - -
CHEMBL5994988 k_off = - s-1 -
CHEMBL5806426 IC50 > 1000.0 nM -
CHEMBL5806426 kon = - -
CHEMBL5806426 k_off = - s-1 -
CHEMBL3403619 IC50 > 1000.0 nM -
CHEMBL3403619 kon = - -
CHEMBL3403619 k_off = - s-1 -