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Assay Detail

CHEMBL5735631

Review assay metadata, readout intent, target linkage, and publication context from the same page.

Binding
Transactivation assays: Transcriptional transactivation assays were performed with gal4 fusion receptor constructs, created using each of the RAR ligand binding domains of either mouse or human, co-transfected with the pFR-luc (Stratagene) reporter construct in COS-7 cells. Thus, transfected cells will constitutively express the gal4-RAR fusion protein which in turn may be transactivated by all trans retinoic acid (atRA) to induce the expression of the luciferase that is driven by a gal4UAS.Briefly, on day 1, 96 well plates were seeded with 8000 cells per well then left to recover overnight. On day 2, the cells were co-transfected with 100 ng of reporter plasmid and 10 ng of the appropriate receptor plasmid per well using lipofectamine (Invitrogen). On day 3, the lipofectamine containing media was replaced by a DMEM without phenol red, followed by the addition of test compound dissolved in 1 μL of DMSO to each well's 100 μL total volume. Finally, on day 4, the cells were lysed and their luciferase substrate was provided by the BrightGlo™ reagent (Promega), the plates were then read on the MicroBeta TriLux™ (Perkin Elmer).On each plate, an 8 point dose-response curve of atRA was run in duplicate and dose-response curves of test compounds were also generated in duplicate.EC50 data both for test compounds and atRA was generated by fitting dose-response curves using GraphPad Prism™. Data for test compounds are quoted as EC50 values. Where replicate data has been generated, the data are quoted as the mean EC50 from the separate experiments.
138
Total Activities
46
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Retinoic acid receptor beta (CHEMBL2008)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Bicycloheteroaryl-heteroaryl-benzoic acid compounds as retinoic acid receptor beta (RARβ) agonists
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
EC50 46 8.10 8.73
kon 46 - -
k_off 46 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL1235644 3 8.73
CHEMBL5946099 3 8.72
CHEMBL4459692 3 8.71
CHEMBL5877402 3 8.70
CHEMBL5899376 3 8.70
CHEMBL4449668 3 8.66
CHEMBL4439399 3 8.60
CHEMBL5818566 3 8.57
CHEMBL5947674 3 8.54
CHEMBL5840509 3 8.54
CHEMBL5940771 3 8.51
CHEMBL4438880 3 8.47
CHEMBL5861416 3 8.44
CHEMBL5941968 3 8.40
CHEMBL5862926 3 8.38
CHEMBL6005408 3 8.37
CHEMBL5967033 3 8.37
CHEMBL5890168 3 8.29
CHEMBL5820942 3 8.28
CHEMBL5957972 3 8.13
CHEMBL5941402 3 8.10
CHEMBL5888315 3 8.09
CHEMBL6032942 3 8.09
CHEMBL5801049 3 8.05
CHEMBL5918147 3 8.00
CHEMBL5799955 3 8.00
CHEMBL5919236 3 7.96
CHEMBL4562084 3 7.96
CHEMBL5913925 3 7.94
CHEMBL5931168 3 7.89

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL1235644 EC50 = 1.88 nM 8.73
CHEMBL5946099 EC50 = 1.9 nM 8.72
CHEMBL4459692 EC50 = 1.94 nM 8.71
CHEMBL5899376 EC50 = 2.0 nM 8.70
CHEMBL5877402 EC50 = 2.0 nM 8.70
CHEMBL4449668 EC50 = 2.2 nM 8.66
CHEMBL4439399 EC50 = 2.5 nM 8.60
CHEMBL5818566 EC50 = 2.7 nM 8.57
CHEMBL5840509 EC50 = 2.9 nM 8.54
CHEMBL5947674 EC50 = 2.9 nM 8.54
CHEMBL5940771 EC50 = 3.1 nM 8.51
CHEMBL4438880 EC50 = 3.4 nM 8.47
CHEMBL5861416 EC50 = 3.6 nM 8.44
CHEMBL5941968 EC50 = 4.0 nM 8.40
CHEMBL5862926 EC50 = 4.2 nM 8.38
CHEMBL6005408 EC50 = 4.3 nM 8.37
CHEMBL5967033 EC50 = 4.3 nM 8.37
CHEMBL5890168 EC50 = 5.1 nM 8.29
CHEMBL5820942 EC50 = 5.2 nM 8.28
CHEMBL5957972 EC50 = 7.4 nM 8.13
CHEMBL5941402 EC50 = 8.0 nM 8.10
CHEMBL6032942 EC50 = 8.2 nM 8.09
CHEMBL5888315 EC50 = 8.1 nM 8.09
CHEMBL5801049 EC50 = 9.0 nM 8.05
CHEMBL5799955 EC50 = 10.0 nM 8.00
CHEMBL5918147 EC50 = 10.0 nM 8.00
CHEMBL4562084 EC50 = 11.0 nM 7.96
CHEMBL5919236 EC50 = 11.0 nM 7.96
CHEMBL5913925 EC50 = 11.4 nM 7.94
CHEMBL5931168 EC50 = 13.0 nM 7.89
CHEMBL5873579 EC50 = 13.0 nM 7.89
CHEMBL5935299 EC50 = 14.0 nM 7.85
CHEMBL4469143 EC50 = 14.0 nM 7.85
CHEMBL5940856 EC50 = 16.0 nM 7.80
CHEMBL5833730 EC50 = 16.0 nM 7.80
CHEMBL5830474 EC50 = 16.0 nM 7.80
CHEMBL5835788 EC50 = 17.0 nM 7.77
CHEMBL5928608 EC50 = 17.0 nM 7.77
CHEMBL5905886 EC50 = 20.0 nM 7.70
CHEMBL5831421 EC50 = 23.0 nM 7.64
CHEMBL5798215 EC50 = 24.0 nM 7.62
CHEMBL5862215 EC50 = 28.0 nM 7.55
CHEMBL5816018 EC50 = 41.0 nM 7.39
CHEMBL5901116 EC50 = 41.0 nM 7.39
CHEMBL5837674 EC50 = 45.0 nM 7.35
CHEMBL5831550 EC50 = 67.0 nM 7.17
CHEMBL6032942 kon = - -
CHEMBL5801049 k_off = - s-1 -
CHEMBL5888315 k_off = - s-1 -
CHEMBL5799955 kon = - -