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Assay Detail

CHEMBL5735685

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Binding
Biological Assay: The activity of EZH2 enzyme (with A677G mutant or Y641F mutant) was tested by the following method.The method was used to determine the inhibitory effect of the compounds of the present invention on the activity of EZH2-A677G mutant or EZH2-Y641F mutant.1. Experimental Materials and Instruments(1). EZH2-A677G (BPS Bioscience)(2). EZH2-Y641F (BPS Bioscience)(3). Histone H3 biotin labeling (AnaSpec)(4). S-adenosyl methionine (abbreviated as SAM, Sigma)(5). Histone H3K27 Me3 monoclonal antibody (Cisbio)(6). Streptavidin-XL665 (Cisbio)(7). HTRF detection buffer (Cisbio)(8). Multi-functional microplate reader (Tecan)2. Experimental ProcedureEZH2-A677G (or EZH2-Y641F) mutant was diluted to a concentration of 15 ng/μl by using a kinase buffer (5× buffer: 5 mg/ml BSA, 150 mM Tris-Cl, 100 mM MgCl2) and added to a 384-well microtiter plate at 2 μl/well. Histone H3 biotin labeling and S-adenosyl methionine were respectively diluted to 50 nM and 50 μM with a kinase buffer, then added to a 384-well plate at 4 μl/well. The test compound was diluted with a kinase buffer (it was diluted from the highest concentration 30 μM in 10 fold concentration gradient to 7 concentration points), then added to the 384-well microtiter plate at 4 μl/well. The plate was incubated at room temperature for 2 hours. Histone H3K27 Me3 monoclonal antibody and Streptavidin-XL665 were diluted to 30 nM and 500 nM by HTRF detection buffer, then added to the 384-well microplate at 10 l/well and incubated for 1 hour. A well without an EZH2 enzyme and a compound was used as a negative control, and a well with an EZH2 enzyme but without a compound was used as a positive control. The fluorescent values were read on a multi-functional microplate reader at a emission wavelength of 620 nM and 665 nM. The compound logarithm concentration vs the inhibition percentage relative to the positive control well was plotted using GraphPad Prism, then the IC50 values were calculated.
96
Total Activities
32
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

Histone-lysine N-methyltransferase EZH2 (CHEMBL2189110)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Benzofuran derivative, preparation method thereof and use thereof in medicine
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 32 8.30 9.10
kon 32 - -
k_off 32 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL4172576 3 9.10
CHEMBL5761827 3 9.05
CHEMBL5884454 3 8.92
CHEMBL5789251 3 8.77
CHEMBL6009168 3 8.57
CHEMBL4164687 3 8.57
CHEMBL6023925 3 8.57
CHEMBL4170327 3 8.54
CHEMBL5798310 3 8.54
CHEMBL5867249 3 8.54
CHEMBL5798295 3 8.46
CHEMBL5975628 3 8.46
CHEMBL5792107 3 8.40
CHEMBL4170753 3 8.40
CHEMBL5868146 3 8.32
CHEMBL5829072 3 8.25
CHEMBL5939817 ZEPRUMETOSTAT 2.0 3 8.24
CHEMBL4162499 3 8.24
CHEMBL4169598 3 8.23
CHEMBL6052492 3 8.21
CHEMBL4161444 3 8.19
CHEMBL6041604 3 8.19
CHEMBL5927475 3 8.17
CHEMBL4176554 3 8.11
CHEMBL5880836 3 8.02
CHEMBL6023503 3 8.00
CHEMBL4159112 3 8.00
CHEMBL5826438 3 7.85
CHEMBL5905477 3 7.85
CHEMBL6006661 3 7.80

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL4172576 IC50 = 0.8 nM 9.10
CHEMBL5761827 IC50 = 0.9 nM 9.05
CHEMBL5884454 IC50 = 1.2 nM 8.92
CHEMBL5789251 IC50 = 1.7 nM 8.77
CHEMBL6009168 IC50 = 2.7 nM 8.57
CHEMBL4164687 IC50 = 2.7 nM 8.57
CHEMBL6023925 IC50 = 2.7 nM 8.57
CHEMBL5867249 IC50 = 2.9 nM 8.54
CHEMBL5798310 IC50 = 2.9 nM 8.54
CHEMBL4170327 IC50 = 2.9 nM 8.54
CHEMBL5975628 IC50 = 3.5 nM 8.46
CHEMBL5798295 IC50 = 3.5 nM 8.46
CHEMBL4170753 IC50 = 4.0 nM 8.40
CHEMBL5792107 IC50 = 4.0 nM 8.40
CHEMBL5868146 IC50 = 4.8 nM 8.32
CHEMBL5829072 IC50 = 5.6 nM 8.25
CHEMBL4162499 IC50 = 5.7 nM 8.24
CHEMBL5939817 ZEPRUMETOSTAT IC50 = 5.7 nM 8.24
CHEMBL4169598 IC50 = 5.9 nM 8.23
CHEMBL6052492 IC50 = 6.2 nM 8.21
CHEMBL6041604 IC50 = 6.5 nM 8.19
CHEMBL4161444 IC50 = 6.4 nM 8.19
CHEMBL5927475 IC50 = 6.8 nM 8.17
CHEMBL4176554 IC50 = 7.8 nM 8.11
CHEMBL5880836 IC50 = 9.6 nM 8.02
CHEMBL4159112 IC50 = 10.0 nM 8.00
CHEMBL6023503 IC50 = 9.9 nM 8.00
CHEMBL5826438 IC50 = 14.0 nM 7.85
CHEMBL5905477 IC50 = 14.0 nM 7.85
CHEMBL6006661 IC50 = 16.0 nM 7.80
CHEMBL6027323 IC50 = 31.0 nM 7.51
CHEMBL5860539 IC50 = 38.0 nM 7.42
CHEMBL5975628 kon = - -
CHEMBL5792107 kon = - -
CHEMBL5792107 k_off = - s-1 -
CHEMBL5867249 k_off = - s-1 -
CHEMBL5867249 kon = - -
CHEMBL5761827 k_off = - s-1 -
CHEMBL5761827 kon = - -
CHEMBL4172576 kon = - -
CHEMBL4169598 kon = - -
CHEMBL4169598 k_off = - s-1 -
CHEMBL5905477 kon = - -
CHEMBL6041604 kon = - -
CHEMBL6023925 k_off = - s-1 -
CHEMBL5905477 k_off = - s-1 -
CHEMBL5868146 kon = - -
CHEMBL5868146 k_off = - s-1 -
CHEMBL6023925 kon = - -
CHEMBL6041604 k_off = - s-1 -