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Assay Detail

CHEMBL5736247

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Binding
GILZ gene assays: HUT78 cells were cultured in IMEM plus 20% heat inactivated FBS and cell density was maintained between 0.1 to 1.2 million/mL. 786-O cells were cultured in RPMI plus 10% heat inactivated FBS. Actively growing cells were harvested and resuspended in HBSS with 2% FBS at 1.1 million cells per mL then dispensed to 384-well V-bottom plates at 45 μL per well. Serially diluted ADC solution was added to the cell plate (5 μL per well) and mixed for 2 min. Cells were then cultured at 37° C., at 5% CO2 for a designated time before supernatant was removed. Cells were harvested in lysis buffer from the Cells-to-Ct kit (40 μL, Life Technologies, 4391851C) following the supplier's protocol and mixed for 10 min followed by addition of 5 μL per well of stop solution from the kit. cDNA was synthesized with a reverse transcription kit (Life Technologies, 4391852C) follow by qPCR using the TaqMan gene expression master mix (Life Technologies, 4369016) with GILZ gene assay (Life Technologies, Hs00608272_m1) and GAPDH assay (Hs2758991_g1) in a duplex format with 3-4 technical replicates.Determination of apparent permeability was as follows. MDCKII cells (kindly provided by the Netherlands Cancer Institute, under a licensing agreement) were seeded on to 96-well transwell culture plates (Millipore Corp, Billerica, Mass.) and used in experiments after five days in culture. Test compound (1 μM) was prepared in Hank's Balanced Salt Solution (HBSS), 10 mM (4-(2-hydroxyethyl)-1-piperrazineethanesulfonic acid) (HEPES, pH 7.4), with 10 μM cyclosporine A (to inhibit endogenous transport) and 1.2 μM dextran Texas red (to confirm monolayer integrity). Substrate solution (150 μL) was added to either the apical (A) or the basolateral (B) compartment of the culture plate, and buffer (150 μL; HBSS, 10 mM HEPES, pH 7.4) with 10 μM cyclosporine A was added to the compartment opposite to that containing the substrate. At t=3 hr, 50 μL samples were removed from both sides of monolayers dosed with test compound and placed in 96 well plates, 50 μL internal standard (1 μM labetolol) and 100 μL HBSS was added to the samples. Samples were analyzed by LC/MS/MS using an Applied Biosystems SCIEX API 5000 triple quadruple mass spectrometer (Concord, ON, Canada) with a TurbolonSpray ion source in the positive ion mode. A Thermo Scientific Transcend LX-2 system (Franklin, Mass.) was coupled to the API 5000 with a flow rate of 800 μL/min to direct sample into the mass spectrometer.
66
Total Activities
22
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 0 — Uncurated / Unknown
Curated By Autocuration

Target

Unchecked (CHEMBL612545)
Type UNCHECKED

Publication

Phosphonate linkers and their use to facilitate cellular retention of compounds
(2020)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 22 8.53 10.00
kon 22 - -
k_off 22 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5927561 3 10.00
CHEMBL5954700 3 9.85
CHEMBL1473 FLUTICASONE PROPIONATE 4.0 3 9.82
CHEMBL5758160 3 9.60
CHEMBL5794824 3 9.49
CHEMBL5833599 3 9.36
CHEMBL5792934 3 9.35
CHEMBL5901785 3 9.15
CHEMBL1370 BUDESONIDE 4.0 3 9.05
CHEMBL5812828 3 8.78
CHEMBL5914440 3 8.70
CHEMBL5999494 3 8.70
CHEMBL384467 DEXAMETHASONE 4.0 3 8.68
CHEMBL6031431 3 8.62
CHEMBL5855081 3 8.41
CHEMBL5995932 3 8.39
CHEMBL5885340 3 7.74
CHEMBL5815679 3 7.62
CHEMBL5758568 3 6.94
CHEMBL5853572 3 6.80
CHEMBL6053028 3 6.79
CHEMBL6051178 3 5.91

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5927561 IC50 = 0.1 nM 10.00
CHEMBL5954700 IC50 = 0.14 nM 9.85
CHEMBL1473 FLUTICASONE PROPIONATE IC50 = 0.15 nM 9.82
CHEMBL5758160 IC50 = 0.25 nM 9.60
CHEMBL5794824 IC50 = 0.32 nM 9.49
CHEMBL5833599 IC50 = 0.44 nM 9.36
CHEMBL5792934 IC50 = 0.45 nM 9.35
CHEMBL5901785 IC50 = 0.71 nM 9.15
CHEMBL1370 BUDESONIDE IC50 = 0.9 nM 9.05
CHEMBL5812828 IC50 = 1.67 nM 8.78
CHEMBL5999494 IC50 = 1.99 nM 8.70
CHEMBL5914440 IC50 = 2.0 nM 8.70
CHEMBL384467 DEXAMETHASONE IC50 = 2.1 nM 8.68
CHEMBL6031431 IC50 = 2.4 nM 8.62
CHEMBL5855081 IC50 = 3.9 nM 8.41
CHEMBL5995932 IC50 = 4.1 nM 8.39
CHEMBL5885340 IC50 = 18.1 nM 7.74
CHEMBL5815679 IC50 = 24.2 nM 7.62
CHEMBL5758568 IC50 = 115.0 nM 6.94
CHEMBL5853572 IC50 = 160.0 nM 6.80
CHEMBL6053028 IC50 = 162.0 nM 6.79
CHEMBL6051178 IC50 = 1225.0 nM 5.91
CHEMBL5815679 k_off = - s-1 -
CHEMBL5995932 kon = - -
CHEMBL5995932 k_off = - s-1 -
CHEMBL5815679 kon = - -
CHEMBL5794824 kon = - -
CHEMBL384467 DEXAMETHASONE kon = - -
CHEMBL384467 DEXAMETHASONE k_off = - s-1 -
CHEMBL1370 BUDESONIDE kon = - -
CHEMBL1370 BUDESONIDE k_off = - s-1 -
CHEMBL1473 FLUTICASONE PROPIONATE kon = - -
CHEMBL1473 FLUTICASONE PROPIONATE k_off = - s-1 -
CHEMBL5833599 kon = - -
CHEMBL5833599 k_off = - s-1 -
CHEMBL5901785 kon = - -
CHEMBL5914440 k_off = - s-1 -
CHEMBL6031431 kon = - -
CHEMBL5914440 kon = - -
CHEMBL6031431 k_off = - s-1 -
CHEMBL5855081 kon = - -
CHEMBL5954700 kon = - -
CHEMBL5855081 k_off = - s-1 -
CHEMBL5927561 k_off = - s-1 -
CHEMBL5927561 kon = - -
CHEMBL5758568 kon = - -
CHEMBL5885340 k_off = - s-1 -
CHEMBL5885340 kon = - -
CHEMBL5758568 k_off = - s-1 -
CHEMBL5954700 k_off = - s-1 -