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Assay Detail

CHEMBL3707490

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Binding
Binding Assay: DNA binding assays using recombinant MBDs. To produce recombinant His6-tagged MBD polypeptides from human MBD2 (MBD2-MBD), MBD2-MBD cDNA was amplified from clone MGC-45084 (American Type Culture Collection), using PCR primers containing BamHI and EcoRI recognition sites (5'-GGATCCATGGAGAGCGGGAAGAGGATGGA-3' (SEQ ID NO:1) and 5'-GAATTCCATCTTTCCAGTTCTGAAGT-3' (SEQ ID NO:2)), and then introduced into pFBC6H, a modified pFastBac-1 baculovirus expression vector (Invitrogen), that had been linearized via cutting with EcoRI and XbaI. This pFB6H-MBD2 expression construct was used to transform DH10BacE. coli competent cells (Invitrogen) to form an MBD2 expression bacmid via site-specific transposition. The MBD2 expression bacmid was then transfected into Sf9 insect cells for production of recombinant MBD2 baculovirus particles, which were used to infect Sf9 cells (1 MOI, 48 hours) to generate recombinant MBD2 protein.
8
Total Activities
8
Compounds Tested
1
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Organism Homo sapiens
Cell Type Sf9
Confidence 9 — Direct single protein target
Curated By Autocuration

Target

Methyl-CpG-binding domain protein 2 (CHEMBL3707462)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Agents for reversing epigenetic silencing of genes
(2015)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
IC50 8 6.05 7.96

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL3687963 1 7.96
CHEMBL3687966 1 6.68
CHEMBL3687965 1 6.33
CHEMBL520851 1 6.17
CHEMBL489770 1 5.81
CHEMBL3687961 1 5.81
CHEMBL3687962 1 5.21
CHEMBL3687964 1 4.42

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL3687963 IC50 = 11.0 nM 7.96
CHEMBL3687966 IC50 = 210.0 nM 6.68
CHEMBL3687965 IC50 = 470.0 nM 6.33
CHEMBL520851 IC50 = 670.0 nM 6.17
CHEMBL489770 IC50 = 1550.0 nM 5.81
CHEMBL3687961 IC50 = 1550.0 nM 5.81
CHEMBL3687962 IC50 = 6140.0 nM 5.21
CHEMBL3687964 IC50 = 38000.0 nM 4.42