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Assay Detail

CHEMBL5732199

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Binding
Lab B PDE2 assay: Performed by Lab B. The activity of the compounds in accordance with the present invention as PDE2 inhibitors may be readily determined using a fluorescence polarization (FP) methodology (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). In particular, the compounds of the following examples had activity in reference assays by exhibiting the ability to inhibit the hydrolysis of the phosphate ester bond of a cyclic nucleotide. Any compound exhibiting a Ki (inhibitory constant) of about 50 μM or below would be considered a PDE2 inhibitor as defined herein.In a typical experiment the PDE2 inhibitory activity of the compounds of the present invention was determined in accordance with the following experimental method. Rhesus PDE2A3 was amplified from rhesus macaque brain cDNA (Biochain Institute, Hayward, Calif.) using primers based on human PDE2A sequence (accession NM_002599.3) where the forward primer containing a Kozak consensus was 5′-gccaccatggggcaggcatgtggc-3′ and the reverse primer was 5′-tcactcagcatcaaggctgca-3′. Amplification with Easy-A High-Fidelity PCR cloning enzyme (Stratagene, La Jolla, Calif.) was 95° C. for 2 minutes followed by thirty three cycles of 95° C. for 40 seconds, 52° C. for 30 seconds, and 72° C. for 2 minutes 48 seconds. Final extension was 72° C. for 7 minutes. The PCR product was TA cloned into pcDNA3.3-TOPO (Invitrogen, Carlsbad, Calif.) according to standard protocol. A consensus sequence was developed from multiple clones and then deposited into GenBank (EU812167). AD293 cells (Stratagene, La Jolla, Calif.) with 70-80% confluency were transiently transfected with rhesus PDE2A3/pcDNA3.3-TOPO using Lipofectamine 2000 according to manufacturer specifications (Invitrogen, Carlsbad, Calif.). Cells were harvested 48 hours post-transfection and lysed by sonication (setting 3, 10×5 sec pulses) in a buffer containing 20 mM HEPES pH 7.4, 1 mM EDTA and Complete Protease Inhibitor Cocktail Tablets (Roche, Indianapolis, Ind.). Lysate was collected by centrifugation at 75,000×g for 20 minutes at 4° C. and supernatant utilized for evaluation of PDE2 activity. The fluorescence polarization assay for cyclic nucleotide phosphodiesterases was performed using an IMAP® FP kit supplied by Molecular Devices, Sunnyvale, Calif. (product # R8139). IMAP® technology has been applied previously to examine the effects of phosphodiesterase inhibitors (Huang, W., et al., J. Biomol Screen, 2002, 7: 215). Assays were performed at room temperature in 384-well microtiter plates with an incubation volume of 20.2 μL. Solutions of test compounds were prepared in DMSO and serially diluted with DMSO to yield 8 μL of each of 10 solutions differing by 3-fold in concentration, at 32 serial dilutions per plate. 100% inhibition is determined using a known PDE2 inhibitor, which can be any compound that is present at 5,000 times its Ki value in the assay described below, such as Bay 60-7550 (Ki-¿0.2 nM) at 1 μM concentration for 100% inhibition. Bay 60-7550 was obtained from Axxora via Fisher Scientific (cat# ALX-270-421-M025/cat#NC9314773). Put another way, any compound with Ki of ¿0.2 to about 2 nM could be used at 1 to 10 μM. 0% of inhibition is determined by using DMSO (1% final concentrations).
903
Total Activities
181
Compounds Tested
3
Activity Types
0
Assay Parameters

Assay Information

Assay Type Binding
Confidence 8 — Homologous single protein target
Curated By Autocuration

Target

cGMP-dependent 3',5'-cyclic phosphodiesterase (CHEMBL2652)
Type SINGLE PROTEIN
Organism Homo sapiens

Publication

Dihydropyrazolopyrimidinone compounds as PDE2 inhibitors
(2019)

Activity Statistics

Type Count Avg pChEMBL Best pChEMBL
Ki 301 8.71 10.80
kon 301 - -
k_off 301 - -

Compounds Tested

Compound Name Phase Activities Best pChEMBL
CHEMBL5827044 6 10.80
CHEMBL5773913 12 10.77
CHEMBL6019094 6 10.70
CHEMBL5867733 6 10.66
CHEMBL6027642 6 10.62
CHEMBL5948981 6 10.52
CHEMBL6040588 6 10.52
CHEMBL6032923 6 10.42
CHEMBL6028983 6 10.40
CHEMBL5774777 6 10.39
CHEMBL5880032 6 10.38
CHEMBL6045656 6 10.36
CHEMBL5871807 6 10.36
CHEMBL5827382 6 10.35
CHEMBL5771360 6 10.34
CHEMBL5912514 6 10.33
CHEMBL5869948 6 10.33
CHEMBL6032101 12 10.32
CHEMBL6050934 6 10.32
CHEMBL5886652 6 10.30
CHEMBL5748229 6 10.28
CHEMBL5963263 6 10.25
CHEMBL6047592 12 10.24
CHEMBL5937033 6 10.24
CHEMBL5866384 6 10.20
CHEMBL5899608 6 10.19
CHEMBL5788813 6 10.19
CHEMBL5928367 6 10.16
CHEMBL6057847 6 10.16
CHEMBL5952104 6 10.15

Activity Data

Compound Name Type Rel. Value Units pChEMBL
CHEMBL5827044 Ki = 0.016 nM 10.80
CHEMBL5773913 Ki = 0.017 nM 10.77
CHEMBL6019094 Ki = 0.02 nM 10.70
CHEMBL5867733 Ki = 0.022 nM 10.66
CHEMBL6027642 Ki = 0.024 nM 10.62
CHEMBL5948981 Ki = 0.03 nM 10.52
CHEMBL6040588 Ki = 0.03 nM 10.52
CHEMBL6032923 Ki = 0.038 nM 10.42
CHEMBL6028983 Ki = 0.04 nM 10.40
CHEMBL5774777 Ki = 0.041 nM 10.39
CHEMBL5880032 Ki = 0.042 nM 10.38
CHEMBL5871807 Ki = 0.044 nM 10.36
CHEMBL6045656 Ki = 0.044 nM 10.36
CHEMBL5827382 Ki = 0.045 nM 10.35
CHEMBL5771360 Ki = 0.046 nM 10.34
CHEMBL5912514 Ki = 0.047 nM 10.33
CHEMBL5869948 Ki = 0.047 nM 10.33
CHEMBL6050934 Ki = 0.048 nM 10.32
CHEMBL6032101 Ki = 0.048 nM 10.32
CHEMBL5886652 Ki = 0.05 nM 10.30
CHEMBL5748229 Ki = 0.053 nM 10.28
CHEMBL5963263 Ki = 0.056 nM 10.25
CHEMBL5937033 Ki = 0.058 nM 10.24
CHEMBL6047592 Ki = 0.057 nM 10.24
CHEMBL5866384 Ki = 0.063 nM 10.20
CHEMBL5899608 Ki = 0.064 nM 10.19
CHEMBL5788813 Ki = 0.064 nM 10.19
CHEMBL5773913 Ki = 0.068 nM 10.17
CHEMBL5928367 Ki = 0.069 nM 10.16
CHEMBL6057847 Ki = 0.069 nM 10.16
CHEMBL5906907 Ki = 0.07 nM 10.15
CHEMBL5952104 Ki = 0.071 nM 10.15
CHEMBL6029400 Ki = 0.073 nM 10.14
CHEMBL5938025 Ki = 0.072 nM 10.14
CHEMBL5851735 Ki = 0.077 nM 10.11
CHEMBL5988705 Ki = 0.08 nM 10.10
CHEMBL5755097 Ki = 0.09 nM 10.05
CHEMBL5963424 Ki = 0.1 nM 10.00
CHEMBL5893408 Ki = 0.099 nM 10.00
CHEMBL6045656 Ki = 0.11 nM 9.96
CHEMBL6047592 Ki = 0.11 nM 9.96
CHEMBL5842631 Ki = 0.12 nM 9.92
CHEMBL5904728 Ki = 0.12 nM 9.92
CHEMBL6023089 Ki = 0.12 nM 9.92
CHEMBL6048289 Ki = 0.12 nM 9.92
CHEMBL5773913 Ki = 0.13 nM 9.89
CHEMBL5996126 Ki = 0.13 nM 9.89
CHEMBL5789980 Ki = 0.13 nM 9.89
CHEMBL5988779 Ki = 0.14 nM 9.85
CHEMBL6019094 Ki = 0.14 nM 9.85