Compound Detail
CHEMBL5218535
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CCC(=O)CCCCC[C@H](NC(=O)[C@H]1CC12CCN(C)CC2)c1ncc(-c2ccc3ncccc3c2)[nH]1
Basic Information
| ChEMBL ID | CHEMBL5218535 |
| Phase | Preclinical |
| Structure Type | MOL |
| InChI Key | NYBMEUCDJUHMPJ-RSXGOPAZSA-N |
6
Targets
7
Activities
2
Assay Types
0
PK Parameters
7
Publications
0
Known Names
Molecular Properties
501.7
MW (Da)
5.44
ALogP
5
HBA
2
HBD
91.0
PSA (Ų)
0.34
QED
2
Ro5 Violations
11
Rot. Bonds
Drug Information
| Availability | Unknown |
| Chirality | Unknown |
Activity Summary
IC50 5 meas. best 9.28
EC50 2 meas. best 7.01
Target Activity Profile
| Target | Type | Best pChEMBL | Mean pChEMBL | Best (nM) | # Data |
|---|---|---|---|---|---|
| Histone deacetylase 1 CHEMBL325 | IC50 | 9.28 | 9.28 | 0.5 | 1 |
| Histone deacetylase 3 CHEMBL1829 | IC50 | 9.2 | 9.2 | 0.6 | 1 |
| Histone deacetylase 2 CHEMBL1937 | IC50 | 8.51 | 8.51 | 3.1 | 1 |
| Unchecked CHEMBL612545 | EC50 | 7.01 | 6.965 | 97.0 | 2 |
| Histone deacetylase 6 CHEMBL1865 | IC50 | 6.16 | 6.16 | 690.0 | 1 |
| Histone deacetylase 8 CHEMBL3192 | IC50 | 5.36 | 5.36 | 4400.0 | 1 |
Activity Data Samples
Top measurements by pChEMBL value
| Target | Type | Rel. | Value | Units | pChEMBL | Assay | PubMed |
|---|---|---|---|---|---|---|---|
| Histone deacetylase 1 | IC50 | = | 0.53 | nM | 9.28 | Inhibition of recombinant human HDAC1 using BML-KI104 as substrate preincubated ... | 33797924 |
| Histone deacetylase 3 | IC50 | = | 0.63 | nM | 9.2 | Inhibition of human full length FLAG-tagged HDAC3 expressed in HEK293F cells usi... | 33797924 |
| Histone deacetylase 2 | IC50 | = | 3.1 | nM | 8.51 | Inhibition of human full length FLAG-tagged HDAC2 expressed in baculovirus infec... | 33797924 |
| Unchecked | EC50 | = | 97.0 | nM | 7.01 | Induction of HIV latency reactivation in Jurkat 2C4 cells assessed as reactivati... | 33797924 |
| Unchecked | EC50 | = | 120.0 | nM | 6.92 | Induction of HIV latency reactivation in Jurkat 2C4 cells assessed as reactivati... | 33797924 |
| Histone deacetylase 6 | IC50 | = | 690.0 | nM | 6.16 | Inhibition of HDAC6 (unknown origin) using BML-KI104 as substrate preincubated f... | 33797924 |
| Histone deacetylase 8 | IC50 | = | 4400.0 | nM | 5.36 | Inhibition of HDAC8 (unknown origin) using BML-KI178 as substrate preincubated f... | 33797924 |
Literature References
| PubMed | DOI | Target Context | # Activities |
|---|---|---|---|
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Unchecked | 2 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Histone deacetylase 1 | 1 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Histone deacetylase 2 | 1 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Histone deacetylase 3 | 1 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Histone deacetylase 6 | 1 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Histone deacetylase 8 | 1 |
| 33797924 | 10.1021/acs.jmedchem.0c02150 | Voltage-gated inwardly rectifying potassium channel KCNH2 | 1 |
Data from ChEMBL 36 via Core Engine