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Compound Detail

CHEMBL177

AMIKACIN
💊 Approved Drug
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💊 Approved Drug
NCC[C@H](O)C(=O)N[C@@H]1C[C@H](N)[C@@H](O[C@H]2O[C@H](CN)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@H]1O[C@H](CO)[C@@H](O)[C@H](N)[C@H]1O

Basic Information

ChEMBL ID CHEMBL177
Name AMIKACIN
Phase Approved
Structure Type MOL
InChI Key LKCWBDHBTVXHDL-RMDFUYIESA-N
Therapeutic ✓ Yes

Known Names

Amikacin Amikacina Amikacine Amikacinum BAY 41-6551 Lukadin NSC-177001 Potentox
4
Targets
15
Activities
3
Assay Types
9
PK Parameters
20
Publications
8
Known Names
12
Indications

Molecular Properties

585.6
MW (Da)
-8.42
ALogP
17
HBA
13
HBD
331.9
PSA (Ų)
0.11
QED
3
Ro5 Violations
10
Rot. Bonds

Drug Information

Molecule Type Small molecule
First Approval 1981
Availability Prescription
Chirality Single Enantiomer

Routes of Administration

Parenteral Topical

Flags

Black Box Warning Natural Product
USAN Stem -kacin
USAN Year 1973

Extended Properties

Molecular Formula C22H43N5O13
MW 585.61
Aromatic Rings 0
Heavy Atoms 40
NP-Likeness 1.58

Indications

Bacterial Infections Eye Infections Cystic Fibrosis Mycobacterium Infections Pneumonia, Bacterial Pneumonia, Ventilator-Associated Lung Diseases Pneumonia Tuberculosis Osteomyelitis Pulmonary Disease, Chronic Obstructive Urinary Tract Infections

ATC Classification

D06AX12
amikacin
Level 1: DERMATOLOGICALS
Level 2: ANTIBIOTICS AND CHEMOTHERAPEUTICS FOR DERMATOLOGICAL USE
J01GB06
amikacin
Level 1: ANTIINFECTIVES FOR SYSTEMIC USE
Level 2: ANTIBACTERIALS FOR SYSTEMIC USE
S01AA21
amikacin
Level 1: SENSORY ORGANS
Level 2: OPHTHALMOLOGICALS

Drug Warnings

Black Box Warning
General Warning
Country: United States

Activity Summary

IC50 10 meas. best 7.16
EC50 3 meas. best 7.16
Kd 2 meas. best 7.3

Target Activity Profile

Target Type Best pChEMBL Mean pChEMBL Best (nM) # Data
Nucleic Acid
CHEMBL345
Kd 7.3 7.3 50.0 1
Mycobacterium tuberculosis
CHEMBL360
EC50 7.16 7.08 70.0 3
Mycobacterium tuberculosis
CHEMBL360
IC50 7.16 7.1217 70.0 6
Ribosomal RNA A-site
CHEMBL614640
IC50 7.16 7.16 70.0 1
Unchecked
CHEMBL612545
IC50 6.8 5.66 160.0 3

Pharmacokinetic Data

Parameter Value Units Species
CL 1.1 mL.min-1.kg-1 Homo sapiens
Cmax 1844.23 nM Homo sapiens
Cmax 60962.07 nM Homo sapiens
Cmax 853.81 nM Homo sapiens
Cmax 341.52 nM Homo sapiens
Fu 0.88 - Homo sapiens
MRT 2.4 hr Homo sapiens
T1/2 2.4 hr Homo sapiens
T1/2 0.58 hr Oryctolagus cuniculus

Activity Data Samples

Top measurements by pChEMBL value

Target Type Rel. Value Units pChEMBL Assay PubMed
Nucleic Acid Kd = 50.0 nM 7.3 Binding affinity to A-site RNA 19445516
Mycobacterium tuberculosis EC50 = 70.0 nM 7.16 Antitubercular activity against Mycobacterium tuberculosis H37Rv by BacTiter-Gl ... 23352268
Mycobacterium tuberculosis EC50 = 70.0 nM 7.16 Antimycobacterial activity against Mycobacterium tuberculosis H37Rv assessed as ... 24472146
Mycobacterium tuberculosis IC50 = 70.0 nM 7.16 Antimicrobial activity against Mycobacterium tuberculosis H37Rv after 7 days by ... 24412719
Mycobacterium tuberculosis IC50 = 70.0 nM 7.16 Antimycobacterial activity against Mycobacterium tuberculosis H37Rv assessed as ... 25129868
Mycobacterium tuberculosis IC50 = 70.0 nM 7.16 Antimicrobial activity against Mycobacterium tuberculosis H37Rv by Alamar blue a... 28552337
Ribosomal RNA A-site IC50 = 70.0 nM 7.16 Binding affinity to 16S rRNA A-site in Escherichia coli S30 extract assessed as ... 27509271
Mycobacterium tuberculosis IC50 = 70.0 nM 7.16 Antimycobacterial activity against Mycobacterium tuberculosis H37Rv assessed as ... 27687968
Mycobacterium tuberculosis IC50 = 80.0 nM 7.1 Antimycobacterial activity against Mycobacterium tuberculosis H37Rv 29202408
Mycobacterium tuberculosis IC50 = 102.0 nM 6.99 Antimicrobial activity against Mycobacterium tuberculosis H37Rv ATCC 27294 incub... 27025343
Mycobacterium tuberculosis EC50 = 120.0 nM 6.92 Antitubercular activity against Mycobacterium tuberculosis H37Rv by microdilutio... 23352268
Unchecked IC50 = 160.0 nM 6.8 Inhibitory activity against the displacement of Picogreen from fMet-tRNA(fMet) b... 12643896
Unchecked IC50 = 1020.0 nM 5.99 Inhibitory activity of the aminoglycoside on Staphylococcus aureus IF-2 binding ... 12643896
Unchecked IC50 = 64630.0 nM 4.19 Inhibition of cytosolic eukaryotic translation in rabbit reticulocyte S30 extrac... 27509271

Literature References

PubMed DOI Target Context # Activities
- 10.6019/CHEMBL3885881 Rattus norvegicus 621
17261619 10.1128/aac.01278-06 Pseudomonas aeruginosa 98
19805565 10.1128/aac.01099-09 Klebsiella pneumoniae 40
18591275 10.1128/aac.01684-07 Acinetobacter baumannii 40
20194693 10.1128/aac.00816-09 Pseudomonas aeruginosa 32
19258280 10.1128/aac.01024-08 Pseudomonas aeruginosa 32
27073054 10.1016/j.bmc.2016.03.060 Staphylococcus aureus 32
18809945 10.1128/aac.00707-08 Pseudomonas aeruginosa 29
17846127 10.1128/aac.01259-06 Acinetobacter baumannii 26
17724156 10.1128/aac.01512-06 Acinetobacter baumannii 23
17043119 10.1128/aac.00892-06 Escherichia coli 23
28574259 10.1021/acs.jmedchem.7b00582 Mycobacteroides abscessus 22
17194835 10.1128/aac.00704-06 Pseudomonas aeruginosa 21
20350950 10.1128/aac.01818-09 Klebsiella pneumoniae 20
20231393 10.1128/aac.01359-09 Escherichia coli 19
15808482 10.1016/j.bmcl.2005.02.029 Pseudomonas aeruginosa 17
17682106 10.1128/aac.00503-07 Pseudomonas aeruginosa 17
17353252 10.1128/aac.01551-06 Mycobacteroides abscessus 17
18519713 10.1128/aac.01341-07 Enterobacter cloacae 16
20498315 10.1128/aac.00080-10 Pseudomonas aeruginosa 16

Data from ChEMBL 36 via Core Engine